Factsheet for Bra015670.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra009783.1-P
Bra020466.1-P
Bra036126.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G77400.1	Bra009783.1-P	AT5G24660.1	21798944
AT1G77400.1	Bra020466.1-P	AT5G24660.1	21798944
AT1G77400.1	Bra036126.1-P	AT5G28900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87519	Canola	nucleus, plastid	47.19	96.6
CDX88369	Canola	nucleus, plastid	46.36	96.54
AT1G77400.1	Thale cress	nucleus	37.01	76.72
Bra008305.1-P	Field mustard	cytosol	34.3	74.32
PGSC0003DMT400015482	Potato	cytosol	14.35	45.39
Solyc03g113480.1.1	Tomato	nucleus	17.05	42.93
PGSC0003DMT400063159	Potato	nucleus	16.63	42.78
VIT_18s0001g02100.t01	Wine grape	nucleus	13.31	38.79
KRH64628	Soybean	nucleus	13.72	38.6
KRH53275	Soybean	cytosol	13.31	36.99

Protein Annotations

EnsemblPlants:Bra015670.1	EnsemblPlants:Bra015670.1-P	EnsemblPlantsGene:Bra015670	Gene3D:2.40.50.140	InterPro:DUF688	InterPro:NA-bd_OB-fold
InterPro:Rep_factor-A_C	PANTHER:PTHR35466	PANTHER:PTHR35466:SF2	PFAM:PF05097	PFAM:PF08646	SEG:seg
SUPFAM:SSF50249	UniParc:UPI0002541AFA	UniProt:M4DGP5	MapMan:35.2	:	:

Description

AT1G77400 (E=5e-049) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G21695.1); Has 289 Blast hits to 275 proteins in 50 species: Archae - 0; Bacteria - 12; Metazoa - 127; Fungi - 25; Plants - 67; Viruses - 10; Other Eukaryotes - 48 (source: NCBI BLink).

Coordinates

chrA07:+:21439687..21442844

Molecular Weight (calculated)

52783.1 Da

IEP (calculated)

9.451

GRAVY (calculated)

-0.595

Length

481 amino acids

Sequence
(BLAST)

001: MAIVAAVDDS FKRPGTVPFS WEVRPGVPKT RTSQPGTGTG TGNGNAPLLQ PPKKLSPLRL KPLSHSQPLL PPALSPPSSS FISSSKSRSL SPLAPSFPTP
101: SKLKPPPPSQ SGLYSPAPSF RSTPRAFSER WQLNRHDRVR PGSESEPRPD FGFAGLGCFP TPKFRLRKSK TGGRRKTGSR LDRDYCSDME TMSPWTASSR
201: RSVSPRWDSP KSSFSSLRFS PRLASEAEWV GDVNVCVSMF DDRAVTFQIK FDEHSYEPKV ILFTSINPKV VGGKLFLNAM SGTRFYFDCE TSAGKEHYER
301: LVGDGANASS SKSKVVPDQK IEPLTIAELN QYILAANPQA EVASLQSEKG WCYIGCSKCA KKLQRDETSF TCLSCDREKA TGVLRYRVEF SVADHTDEAV
401: FVEFDTEIAK LTSIQASERD NHGPDDNGDC AKLADGVAPK IDESTVNNEA SASNVPYHVP QVANKQKLVN DVNLKKKARN E

Best Arabidopsis Sequence Match ( AT1G77400.1 )
(BLAST)

001: MAIIDVDDSF KRPGTIPFSW EIRPGVPKTR MSQPGNTTPL QPPKKLSPLR FKPLSHSQPL LPPALSPPSS SFISNSKSRP LSPLTPHSFS TTPSKLKPPR
101: TPSSLSGFYS PGPSFRSSPR AFSERWQLHR PNRIRPESEP EPSSDFSVAG FGCFPSPKFR LRKVKSGGSR RKSGSRSEND YYCSDMETMS PWTVSSRRSV
201: SPRWESPKSS FSSLRFSPRF ANEAEWVGFG LF

Arabidopsis Description

At1g77400 [Source:UniProtKB/TrEMBL;Acc:Q9FVW9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.