CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d004978_P001	Maize	plastid	77.88	90.93
KXG28657	Sorghum	plastid	26.12	88.1
Os12t0137200-01	Rice	plastid	84.47	84.07
HORVU5Hr1G043550.6	Barley	mitochondrion	80.71	74.89
Os11t0140700-02	Rice	cytosol, peroxisome	25.65	74.66
GSMUA_Achr11P...	Banana	plastid	71.76	72.79
VIT_06s0061g00080.t01	Wine grape	plastid	70.59	71.09
TraesCS5A01G135800.1	Wheat	mitochondrion	64.47	69.54
TraesCS5D01G142300.1	Wheat	mitochondrion	64.71	69.44
TraesCS5B01G134600.2	Wheat	mitochondrion	63.29	67.93
AT1G50450.1	Thale cress	mitochondrion	68.0	67.52
KRH24096	Soybean	plastid	67.29	66.67
CDY37136	Canola	mitochondrion	65.65	65.8
CDY22796	Canola	mitochondrion	65.65	65.8
KRH29070	Soybean	plastid	60.24	64.32
PGSC0003DMT400088617	Potato	mitochondrion	63.53	62.79
Solyc11g065240.1.1	Tomato	plastid	63.53	62.79
Bra018849.1-P	Field mustard	cytosol, nucleus, peroxisome	64.71	46.61
OQU79120	Sorghum	extracellular	28.47	37.69

Protein Annotations

EnsemblPlants:EES09230	EnsemblPlantsGene:SORBI_3005G028800	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:NAD(P)-bd_dom_sf	InterPro:Sacchrp_dh_NADP	PANTHER:PTHR43796
PANTHER:PTHR43796:SF1	PFAM:PF03435	ProteinID:EES09230	ProteinID:EES09230.2	SEG:seg	SUPFAM:SSF51735
unigene:Sbi.365	UniParc:UPI00081AD20B	UniProt:C5Y464	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr5:+:2574514..2578988

Molecular Weight (calculated)

45552.7 Da

IEP (calculated)

9.041

GRAVY (calculated)

-0.083

Length

425 amino acids

Sequence
(BLAST)

001: MGIVVRACAP PAPAAAAPSG SREAAQAQRR SRQSRTARVL VLGGTGRVGG STATAISKLR PDLGILVGGR NREKGESVAA KLGSQSEFVQ VDTRDAGMLE
101: EALQGVDLVV HTAGPFQRAE ECTVLQAAIS TKTPYIDVCD DTDYSWRAKG FHEQAKAAGV PAITTAGIYP GVSNVMAAEL VHAARSENGE PERLRFFYYT
201: AGTGGAGPTI LATSFLLLGE DVIAYNKGEE IKLKPYSGAL NIDFGKGVRK KNVYLLNLPE VKSAFKILGV PTVSARFGTA PFFWNWGMQA FANFLPVEFL
301: RDRNKVQKLV QSVDPLVRAV DGIAGERVSM RVDLDCSNGR NTIGLFTHKK LSVSVGYATA AFALAVLEGN TQPGVWFPEE PEGIPMEARK LLLERASQGT
401: STFVMNKPSW MVETDPKEVG LGIYV

Best Arabidopsis Sequence Match ( AT1G50450.1 )
(BLAST)

001: MTRALLLQPY RATVRAASSR ETQYDGVPEV KFSDPSRNYR VLVLGGTGRV GGSTATALSK LCPELKIVVG GRNREKGEAM VAKLGENSEF SQVDINDAKM
101: LETSLRDVDL VVHAAGPFQQ APRCTVLEAA IKTKTAYLDV CDDTSYAFRA KSLEAEAIAA NIPALTTAGI YPGVSNVMAA EMVAAARSED KGKPEKLRFS
201: YYTAGTGGAG PTILATSFLL LGEEVTAYKQ GEKVKLRPYS GMITVDFGKG IRKRDVYLLN LPEVRSTHEV LGVPTVVARF GTAPFFWNWG MEIMTKLLPS
301: EVLRDRTKVQ QMVELFDPVV RAMDGFAGER VSMRVDLECS DGRTTVGLFS HKKLSVSVGV STAAFVAAML EGSTQPGVWF PEEPQGIAVE AREVLLKRAS
401: QGTFNFILNK PPWMVETEPK EVVLGIYV

Arabidopsis Description

At1g50450/F11F12_20 [Source:UniProtKB/TrEMBL;Acc:Q94BZ0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.