Factsheet for VIT_06s0061g00080.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24096	Soybean	plastid	78.91	77.62
KRH29070	Soybean	plastid	71.33	75.63
GSMUA_Achr11P...	Banana	plastid	74.17	74.7
AT1G50450.1	Thale cress	mitochondrion	74.41	73.36
PGSC0003DMT400088617	Potato	mitochondrion	73.93	72.56
Solyc11g065240.1.1	Tomato	plastid	73.46	72.09
CDY22796	Canola	mitochondrion	72.04	71.7
CDY37136	Canola	mitochondrion	71.56	71.23
EES09230	Sorghum	plastid	71.09	70.59
TraesCS5D01G142600.1	Wheat	plastid	70.62	70.45
TraesCS5B01G135000.2	Wheat	plastid	70.62	70.45
TraesCS5A01G136000.1	Wheat	plastid	70.62	70.45
Os12t0137200-01	Rice	plastid	69.43	68.62
Zm00001d004978_P001	Maize	plastid	57.82	67.03
HORVU5Hr1G043550.6	Barley	mitochondrion	71.09	65.5
TraesCS5A01G135800.1	Wheat	mitochondrion	58.53	62.69
TraesCS5D01G142300.1	Wheat	mitochondrion	58.06	61.87
TraesCS5B01G134600.2	Wheat	mitochondrion	57.35	61.11
Os11t0140700-02	Rice	cytosol, peroxisome	18.96	54.79
Bra018849.1-P	Field mustard	cytosol, nucleus, peroxisome	71.56	51.19
KXG28657	Sorghum	plastid	13.03	43.65
OQU79120	Sorghum	extracellular	20.85	27.41

Protein Annotations

EntrezGene:100251769	wikigene:100251769	Gene3D:3.40.50.720	MapMan:35.2	ProteinID:CBI17190	ProteinID:CBI17190.3
UniProt:D7SNG1	EMBL:FN594957	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0055114	EntrezGene:LOC100251769	wikigene:LOC100251769	InterPro:NAD(P)-bd_dom_sf	PFAM:PF03435
PANTHER:PTHR43796	PANTHER:PTHR43796:SF1	SUPFAM:SSF51735	InterPro:Sacchrp_dh_NADP	TIGR:TC54580	UniParc:UPI0001BE0FAF
ArrayExpress:VIT_06s0061g00080	EnsemblPlantsGene:VIT_06s0061g00080	EnsemblPlants:VIT_06s0061g00080.t01	unigene:Vvi.3824	RefSeq:XP_002274681	RefSeq:XP_002274681.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:17278043..17292926

Molecular Weight (calculated)

45679.2 Da

IEP (calculated)

6.795

GRAVY (calculated)

-0.001

Length

422 amino acids

Sequence
(BLAST)

001: MAGASLHLNS TTVLASLQEN QPRVHLPEKT ANRRVLVLGG TGRVGGSTAI ALSKLCPDLR ITVGGRNREK GAAMLAKLGE NSEFAEVNID NVKSLEAALN
101: DVDLVIHTAG PFQQAEKCTV LEAAIETKTA YVDVCDDTTY AWRAKSLLEK ALSANVPAIT TGGIYPGVSN VMAAELVRVA RSESQGKPER LRFYYYTAGT
201: GGAGPTILAT SFLLLGEEVV AYNKGEKIKL KPYSGMLNID FGKGIGKRDV YLLHLPEVRS AHEILGVPTV SARFGTAPFF WNWGMEAMTN LLPVEFLRDR
301: SKVQELVQLF DPIVRAMDGI AGERVSMRVD LECSDGRNTV GLFSHRRLSV SVGFATAAFA LAVLEGSTQP GVWFPEEPEG IAIDARDILL KRAAQGTINF
401: IMNKPPWMVE TDPKELGLGI YV

Best Arabidopsis Sequence Match ( AT1G50450.1 )
(BLAST)

001: MTRALLLQPY RATVRAASSR ETQYDGVPEV KFSDPSRNYR VLVLGGTGRV GGSTATALSK LCPELKIVVG GRNREKGEAM VAKLGENSEF SQVDINDAKM
101: LETSLRDVDL VVHAAGPFQQ APRCTVLEAA IKTKTAYLDV CDDTSYAFRA KSLEAEAIAA NIPALTTAGI YPGVSNVMAA EMVAAARSED KGKPEKLRFS
201: YYTAGTGGAG PTILATSFLL LGEEVTAYKQ GEKVKLRPYS GMITVDFGKG IRKRDVYLLN LPEVRSTHEV LGVPTVVARF GTAPFFWNWG MEIMTKLLPS
301: EVLRDRTKVQ QMVELFDPVV RAMDGFAGER VSMRVDLECS DGRTTVGLFS HKKLSVSVGV STAAFVAAML EGSTQPGVWF PEEPQGIAVE AREVLLKRAS
401: QGTFNFILNK PPWMVETEPK EVVLGIYV

Arabidopsis Description

At1g50450/F11F12_20 [Source:UniProtKB/TrEMBL;Acc:Q94BZ0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.