Factsheet for PGSC0003DMT400088617

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 3
plastid 1
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g065240.1.1	Tomato	plastid	97.91	97.91
VIT_06s0061g00080.t01	Wine grape	plastid	72.56	73.93
KRH24096	Soybean	plastid	71.16	71.33
GSMUA_Achr11P...	Banana	plastid	68.6	70.41
CDY22796	Canola	mitochondrion	67.44	68.4
KRH29070	Soybean	plastid	63.26	68.34
AT1G50450.1	Thale cress	mitochondrion	67.91	68.22
CDY37136	Canola	mitochondrion	66.74	67.69
Os12t0137200-01	Rice	plastid	65.35	65.81
TraesCS5A01G136000.1	Wheat	plastid	62.79	63.83
TraesCS5B01G135000.2	Wheat	plastid	62.56	63.59
TraesCS5D01G142600.1	Wheat	plastid	62.56	63.59
EES09230	Sorghum	plastid	62.79	63.53
Zm00001d004978_P001	Maize	plastid	50.93	60.16
TraesCS5A01G135800.1	Wheat	mitochondrion	55.12	60.15
TraesCS5D01G142300.1	Wheat	mitochondrion	54.65	59.34
HORVU5Hr1G043550.6	Barley	mitochondrion	62.79	58.95
TraesCS5B01G134600.2	Wheat	mitochondrion	53.49	58.08
Os11t0140700-02	Rice	cytosol, peroxisome	17.91	52.74
Bra018849.1-P	Field mustard	cytosol, nucleus, peroxisome	66.28	48.31
KXG28657	Sorghum	plastid	10.7	36.51
OQU79120	Sorghum	extracellular	17.67	23.68

Protein Annotations

EntrezGene:102588446	Gene3D:3.40.50.720	MapMan:35.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	UniProt:M1DGC6	InterPro:NAD(P)-bd_dom_sf	PFAM:PF03435
EnsemblPlantsGene:PGSC0003DMG400038188	PGSC:PGSC0003DMG400038188	EnsemblPlants:PGSC0003DMT400088617	PANTHER:PTHR43796	PANTHER:PTHR43796:SF1	SUPFAM:SSF51735
InterPro:Sacchrp_dh_NADP	UniParc:UPI000294C999	RefSeq:XP_006365186.1	SEG:seg	:	:

Description

Saccharopine dehydrogenase family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400038188]

Coordinates

chr11:+:36805292..36814809

Molecular Weight (calculated)

46669.4 Da

IEP (calculated)

6.935

GRAVY (calculated)

-0.023

Length

430 amino acids

Sequence
(BLAST)

001: MASLGMYSWT TGIKKRVFVR VANLAKENEK RVEIAEKVKN SKVVILGGTG RVGGSTAIAL SKLCPDLNIV IAGRNREKGA SMVSKLGKNA EFAEVNIDDR
101: EALEANLTDA DIVVHAAGPF QQSENCKVLE AAIGTKTAYL DICDDTSYAT RAKSYMNKAL EANIPAITTG GIYPGVSNVM AAELVRTAKL ESEGELERLR
201: FYYYTAGTGG AGPTILATSF LLLGEDVIAY NKGEKIKLTP YSGMLSIDFG MGIGKKDVYL LNLPEVKSVH EVLGVPTVSA RFGTDPFFWN WGMIAMRNLL
301: PQEFLRDRSK VQQLVQLFDP VVRAVDGTAG EAVSMRVDLE CSDGHNRIGI FSHKRLSKSV GISTAAFVLA ILEGSTKPGV WFPEEPEGIA VEAREVLLQR
401: ASEGTINFIL NKAPWMVETN PKELGFGIYS

Best Arabidopsis Sequence Match ( AT1G50450.1 )
(BLAST)

001: MTRALLLQPY RATVRAASSR ETQYDGVPEV KFSDPSRNYR VLVLGGTGRV GGSTATALSK LCPELKIVVG GRNREKGEAM VAKLGENSEF SQVDINDAKM
101: LETSLRDVDL VVHAAGPFQQ APRCTVLEAA IKTKTAYLDV CDDTSYAFRA KSLEAEAIAA NIPALTTAGI YPGVSNVMAA EMVAAARSED KGKPEKLRFS
201: YYTAGTGGAG PTILATSFLL LGEEVTAYKQ GEKVKLRPYS GMITVDFGKG IRKRDVYLLN LPEVRSTHEV LGVPTVVARF GTAPFFWNWG MEIMTKLLPS
301: EVLRDRTKVQ QMVELFDPVV RAMDGFAGER VSMRVDLECS DGRTTVGLFS HKKLSVSVGV STAAFVAAML EGSTQPGVWF PEEPQGIAVE AREVLLKRAS
401: QGTFNFILNK PPWMVETEPK EVVLGIYV

Arabidopsis Description

At1g50450/F11F12_20 [Source:UniProtKB/TrEMBL;Acc:Q94BZ0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.