CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
peroxisome 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22796	Canola	mitochondrion	98.11	98.11
AT1G50450.1	Thale cress	mitochondrion	86.32	85.51
VIT_06s0061g00080.t01	Wine grape	plastid	71.23	71.56
KRH24096	Soybean	plastid	70.52	69.7
KRH29070	Soybean	plastid	64.15	68.34
TraesCS5D01G142600.1	Wheat	plastid	67.92	68.09
Solyc11g065240.1.1	Tomato	plastid	68.4	67.44
TraesCS5A01G136000.1	Wheat	plastid	67.22	67.38
Bra018849.1-P	Field mustard	cytosol, nucleus, peroxisome	93.63	67.29
TraesCS5B01G135000.2	Wheat	plastid	66.98	67.14
PGSC0003DMT400088617	Potato	mitochondrion	67.69	66.74
GSMUA_Achr11P...	Banana	plastid	65.33	66.11
EES09230	Sorghum	plastid	65.8	65.65
Os12t0137200-01	Rice	plastid	65.33	64.87
Zm00001d004978_P001	Maize	plastid	53.77	62.64
HORVU5Hr1G043550.6	Barley	mitochondrion	67.22	62.23
Os11t0140700-02	Rice	cytosol, peroxisome	20.75	60.27
TraesCS5A01G135800.1	Wheat	mitochondrion	53.07	57.11
TraesCS5D01G142300.1	Wheat	mitochondrion	52.83	56.57
TraesCS5B01G134600.2	Wheat	mitochondrion	51.65	55.3
KXG28657	Sorghum	plastid	14.62	49.21
OQU79120	Sorghum	extracellular	20.99	27.73

Protein Annotations

EnsemblPlants:CDY37136	EnsemblPlantsGene:GSBRNA2T00063375001	Gene3D:3.40.50.720	GO:A0A078HHF7	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:NAD(P)-bd_dom_sf	InterPro:Sacchrp_dh_NADP
PANTHER:PTHR43796	PANTHER:PTHR43796:SF1	PFAM:PF03435	ProteinID:CDY37136	ProteinID:CDY37136.1	SEG:seg
SUPFAM:SSF51735	UniParc:UPI0004EDEFC0	UniProt:A0A078HHF7	MapMan:35.2	:	:

Description

BnaC06g03630DBnaC06g03630D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HHF7]

Coordinates

chrLK032392:+:249825..252594

Molecular Weight (calculated)

45988.8 Da

IEP (calculated)

9.038

GRAVY (calculated)

0.001

Length

424 amino acids

Sequence
(BLAST)

001: MMARVLPLHH PYRATTVRAS SSNETKYSGV VPDVKLADPT RNYRVLVLGG TGRVGESTAV ALSKLCPKLK IVVAGRNREK GEAMVAKLGE NSEFCQVDIN
101: DANMLQTSLK DVDLVVHAAG PFQQAPKCTV LEAAIKTKTA YIDVCDDTSY AFRAKALQAE ALAANVPAIT TAGIYPGVSN VMAAEMVAAA RSEDKGKPEK
201: LRFSYYTAGT GGAGPTILAT SFLLLGEEKV KLKPYSGMIN VDFGKGIRKR DVYLLNLPEV RSTHEVLGVP TVSARFGTSP FFWNWGMEIM TKLLPPEVLR
301: DRAKVQQMVD LFDPVVRATD SFSGERVSMR VDLECSDGRV AVGLYSHKKL SVAVGVSTAA FVVAMLEGST QPGVWFPEEP QGIAVEAREA LLRRASQGTF
401: NFILNKPPWM VETVPKEVIL GIYV

Best Arabidopsis Sequence Match ( AT1G50450.1 )
(BLAST)

001: MTRALLLQPY RATVRAASSR ETQYDGVPEV KFSDPSRNYR VLVLGGTGRV GGSTATALSK LCPELKIVVG GRNREKGEAM VAKLGENSEF SQVDINDAKM
101: LETSLRDVDL VVHAAGPFQQ APRCTVLEAA IKTKTAYLDV CDDTSYAFRA KSLEAEAIAA NIPALTTAGI YPGVSNVMAA EMVAAARSED KGKPEKLRFS
201: YYTAGTGGAG PTILATSFLL LGEEVTAYKQ GEKVKLRPYS GMITVDFGKG IRKRDVYLLN LPEVRSTHEV LGVPTVVARF GTAPFFWNWG MEIMTKLLPS
301: EVLRDRTKVQ QMVELFDPVV RAMDGFAGER VSMRVDLECS DGRTTVGLFS HKKLSVSVGV STAAFVAAML EGSTQPGVWF PEEPQGIAVE AREVLLKRAS
401: QGTFNFILNK PPWMVETEPK EVVLGIYV

Arabidopsis Description

At1g50450/F11F12_20 [Source:UniProtKB/TrEMBL;Acc:Q94BZ0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.