Factsheet for Solyc11g065240.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400088617	Potato	mitochondrion	97.91	97.91
VIT_06s0061g00080.t01	Wine grape	plastid	72.09	73.46
KRH24096	Soybean	plastid	71.16	71.33
GSMUA_Achr11P...	Banana	plastid	68.37	70.17
CDY22796	Canola	mitochondrion	68.14	69.1
AT1G50450.1	Thale cress	mitochondrion	68.6	68.93
KRH29070	Soybean	plastid	63.72	68.84
CDY37136	Canola	mitochondrion	67.44	68.4
Os12t0137200-01	Rice	plastid	65.12	65.57
TraesCS5A01G136000.1	Wheat	plastid	62.56	63.59
EES09230	Sorghum	plastid	62.79	63.53
TraesCS5B01G135000.2	Wheat	plastid	62.33	63.36
TraesCS5D01G142600.1	Wheat	plastid	62.33	63.36
Zm00001d004978_P001	Maize	plastid	50.93	60.16
TraesCS5A01G135800.1	Wheat	mitochondrion	54.88	59.9
TraesCS5D01G142300.1	Wheat	mitochondrion	54.65	59.34
HORVU5Hr1G043550.6	Barley	mitochondrion	62.56	58.73
TraesCS5B01G134600.2	Wheat	mitochondrion	53.49	58.08
Os11t0140700-02	Rice	cytosol, peroxisome	17.91	52.74
Bra018849.1-P	Field mustard	cytosol, nucleus, peroxisome	66.98	48.81
KXG28657	Sorghum	plastid	10.47	35.71
OQU79120	Sorghum	extracellular	18.14	24.3

Protein Annotations

EnsemblPlants:Solyc11g065240.1.1	EnsemblPlantsGene:Solyc11g065240.1	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:NAD(P)-bd_dom_sf	InterPro:Sacchrp_dh_NADP	PANTHER:PTHR43796
PANTHER:PTHR43796:SF1	PFAM:PF03435	SEG:seg	SUPFAM:SSF51735	UniParc:UPI0002769961	UniProt:K4D9D7
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr11:+:50610085..50619412

Molecular Weight (calculated)

46674.3 Da

IEP (calculated)

6.544

GRAVY (calculated)

-0.019

Length

430 amino acids

Sequence
(BLAST)

001: MASLGMYSWT TGIKKRVFVR AANLAKENEK RVEVAEKVRN SKAVILGGTG RVGGSTAIAL SKLCPDLNIV IAGRNREKGA AMVSKLGKNA EFAEVNIDDR
101: EALEANLTDA DIVVHAAGPF QQSENCKVLE AAIGTKTAYL DICDDTSYAT RAKSYMNMAL EANIPAITTA GIYPGVSNVM AAELVRTAKL ESEGELERLR
201: FYYYTAGTGG AGPTILATSF LLLGEDVIAY NKGEKIKLTP YSGMLSIDFG MGIGKKDVYL LNLPEVKSVH EVLGVPTVSA RFGTDPFFWN WGMIAMRNLL
301: PQEFLRDRSK VQQLVQLFDP VVRAVDGTAG EAVSMRVDLE CSDGHNRIGI FSHKRLSRSV GISTAAFVLA MLEGSTKPGV WFPEEPEGIA VEAREVLLQR
401: ASEGTINFIL NKAPWMVETN PKELGFGIYS

Best Arabidopsis Sequence Match ( AT1G50450.1 )
(BLAST)

001: MTRALLLQPY RATVRAASSR ETQYDGVPEV KFSDPSRNYR VLVLGGTGRV GGSTATALSK LCPELKIVVG GRNREKGEAM VAKLGENSEF SQVDINDAKM
101: LETSLRDVDL VVHAAGPFQQ APRCTVLEAA IKTKTAYLDV CDDTSYAFRA KSLEAEAIAA NIPALTTAGI YPGVSNVMAA EMVAAARSED KGKPEKLRFS
201: YYTAGTGGAG PTILATSFLL LGEEVTAYKQ GEKVKLRPYS GMITVDFGKG IRKRDVYLLN LPEVRSTHEV LGVPTVVARF GTAPFFWNWG MEIMTKLLPS
301: EVLRDRTKVQ QMVELFDPVV RAMDGFAGER VSMRVDLECS DGRTTVGLFS HKKLSVSVGV STAAFVAAML EGSTQPGVWF PEEPQGIAVE AREVLLKRAS
401: QGTFNFILNK PPWMVETEPK EVVLGIYV

Arabidopsis Description

At1g50450/F11F12_20 [Source:UniProtKB/TrEMBL;Acc:Q94BZ0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.