Factsheet for Zm00001d004978_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	mitochondrion
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES09230	Sorghum	plastid	90.93	77.88
KXG28657	Sorghum	plastid	26.37	76.19
Os11t0140700-02	Rice	cytosol, peroxisome	29.67	73.97
Os12t0137200-01	Rice	plastid	80.22	68.38
HORVU5Hr1G043550.6	Barley	mitochondrion	77.75	61.79
GSMUA_Achr11P...	Banana	plastid	67.03	58.23
TraesCS5A01G135800.1	Wheat	mitochondrion	62.91	58.12
TraesCS5D01G142300.1	Wheat	mitochondrion	63.19	58.08
KRH29070	Soybean	plastid	63.46	58.04
VIT_06s0061g00080.t01	Wine grape	plastid	67.03	57.82
TraesCS5B01G134600.2	Wheat	mitochondrion	61.54	56.57
AT1G50450.1	Thale cress	mitochondrion	64.56	54.91
KRH24096	Soybean	plastid	63.74	54.08
CDY37136	Canola	mitochondrion	62.64	53.77
CDY22796	Canola	mitochondrion	62.64	53.77
PGSC0003DMT400088617	Potato	mitochondrion	60.16	50.93
Solyc11g065240.1.1	Tomato	plastid	60.16	50.93
Bra018849.1-P	Field mustard	cytosol, nucleus, peroxisome	61.81	38.14
OQU79120	Sorghum	extracellular	32.69	37.07

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.2	UniProt:A0A1D6EID9	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009534	GO:GO:0009536	GO:GO:0009579	GO:GO:0016491	GO:GO:0055114	InterPro:NAD(P)-bd_dom_sf
ProteinID:ONM19878.1	PFAM:PF03435	PANTHER:PTHR43796	PANTHER:PTHR43796:SF1	SUPFAM:SSF51735	InterPro:Sacchrp_dh_NADP
UniParc:UPI000843717C	EnsemblPlantsGene:Zm00001d004978	EnsemblPlants:Zm00001d004978_P001	EnsemblPlants:Zm00001d004978_T001	SEG:seg	:

Description

Saccharopine dehydrogenase

Coordinates

chr2:-:151887246..151891610

Molecular Weight (calculated)

38796.5 Da

IEP (calculated)

9.645

GRAVY (calculated)

-0.066

Length

364 amino acids

Sequence
(BLAST)

001: MGAIGIVVRA CAPLAPAAAA APAPSGSSSR DAAQAQRWSK PTRTGRVLVL GGTGRVGGST ATALSKLRPD LGILVGGRNR FDREKGESIA AKLGGQSEFV
101: QVDTRNAGML EEALQGVDLV VHTAGPFQRA EECTVLQAAI STKTPYIDVC DDTDYSWRAK GFHEQAKAAG VPAITTAGIY PGVSNVMAAE LVHAARSENG
201: EPERLRFFYY TAGTGGAGPT ILTTSFLLLG EDVIAYNKGE EIKLKPYSGA LNIDFGKGVR KKNVYLLNLP EVKSAFKILG VPTVSARFGT APFFWNWGMQ
301: AFANFLPVEF LRDRNKVQKL VQSVDPLVRA VDGIAGEHVS MRVDLDCSNG RNTIGLFTHK KLSV

Best Arabidopsis Sequence Match ( AT1G50450.1 )
(BLAST)

001: MTRALLLQPY RATVRAASSR ETQYDGVPEV KFSDPSRNYR VLVLGGTGRV GGSTATALSK LCPELKIVVG GRNREKGEAM VAKLGENSEF SQVDINDAKM
101: LETSLRDVDL VVHAAGPFQQ APRCTVLEAA IKTKTAYLDV CDDTSYAFRA KSLEAEAIAA NIPALTTAGI YPGVSNVMAA EMVAAARSED KGKPEKLRFS
201: YYTAGTGGAG PTILATSFLL LGEEVTAYKQ GEKVKLRPYS GMITVDFGKG IRKRDVYLLN LPEVRSTHEV LGVPTVVARF GTAPFFWNWG MEIMTKLLPS
301: EVLRDRTKVQ QMVELFDPVV RAMDGFAGER VSMRVDLECS DGRTTVGLFS HKKLSVSVGV STAAFVAAML EGSTQPGVWF PEEPQGIAVE AREVLLKRAS
401: QGTFNFILNK PPWMVETEPK EVVLGIYV

Arabidopsis Description

At1g50450/F11F12_20 [Source:UniProtKB/TrEMBL;Acc:Q94BZ0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.