Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G136000.1 | Wheat | plastid | 97.16 | 97.16 |
| TraesCS5D01G142600.1 | Wheat | plastid | 96.93 | 96.93 |
| HORVU5Hr1G043550.6 | Barley | mitochondrion | 96.45 | 89.08 |
| GSMUA_Achr11P... | Banana | plastid | 72.1 | 72.79 |
| VIT_06s0061g00080.t01 | Wine grape | plastid | 70.45 | 70.62 |
| TraesCS5B01G134600.2 | Wheat | mitochondrion | 64.54 | 68.94 |
| AT1G50450.1 | Thale cress | mitochondrion | 68.32 | 67.52 |
| CDY22796 | Canola | mitochondrion | 67.38 | 67.22 |
| CDY37136 | Canola | mitochondrion | 67.14 | 66.98 |
| KRH24096 | Soybean | plastid | 65.96 | 65.03 |
| KRH29070 | Soybean | plastid | 59.81 | 63.57 |
| PGSC0003DMT400088617 | Potato | mitochondrion | 63.59 | 62.56 |
| Solyc11g065240.1.1 | Tomato | plastid | 63.36 | 62.33 |
| Bra018849.1-P | Field mustard | cytosol, nucleus, peroxisome | 66.67 | 47.8 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G135000.2 | EnsemblPlantsGene:TraesCS5B01G135000 | Gene3D:3.40.50.720 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016491 | GO:GO:0055114 | InterPro:NAD(P)-bd_dom_sf | InterPro:Sacchrp_dh_NADP | PANTHER:PTHR43796 |
| PANTHER:PTHR43796:SF1 | PFAM:PF03435 | SEG:seg | SUPFAM:SSF51735 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr5B:-:254496803..254500817
Molecular Weight (calculated)
45567.8 Da
IEP (calculated)
7.039
GRAVY (calculated)
-0.053
Length
423 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAMVRACMP LRTPPAAASS TATAPAAPSK PRSSARVLVL GGTGRVGGST ATALSKLRPD LNILIGGRNR EKGESLASEL GEQSEFVKID TGNAAMLEKA
101: LEDVDLVVHT AGPFQREAEC TVLRAAISTK TAYIDVCDDM DYSWRAKAFH EEAKAQGVPA ITTAGIYPGV SNVMAAELVS AARSEDGEPE RLRFFYYTAG
201: SGGAGPTILA TSFLLLGEDV IAYNKGEEIK LKPYSGVLNI DFGKGVRKRD VYLLNLPEVK SAHKFLGVPT VSARFGTAPF FWNWGMEAFA KFLPVELLRD
301: KDKVGKLVKE IDPLVRAIDG IVGERVSMRV DLECSNGRNT IGLFSHRKLS VSVGHSTAAF VQAVLEGSTQ PGVWFPEEPE GIAIESRKLL LERASQGTTN
401: FVMNKPSWMI ETDPKEVILG IYV
101: LEDVDLVVHT AGPFQREAEC TVLRAAISTK TAYIDVCDDM DYSWRAKAFH EEAKAQGVPA ITTAGIYPGV SNVMAAELVS AARSEDGEPE RLRFFYYTAG
201: SGGAGPTILA TSFLLLGEDV IAYNKGEEIK LKPYSGVLNI DFGKGVRKRD VYLLNLPEVK SAHKFLGVPT VSARFGTAPF FWNWGMEAFA KFLPVELLRD
301: KDKVGKLVKE IDPLVRAIDG IVGERVSMRV DLECSNGRNT IGLFSHRKLS VSVGHSTAAF VQAVLEGSTQ PGVWFPEEPE GIAIESRKLL LERASQGTTN
401: FVMNKPSWMI ETDPKEVILG IYV
001: MTRALLLQPY RATVRAASSR ETQYDGVPEV KFSDPSRNYR VLVLGGTGRV GGSTATALSK LCPELKIVVG GRNREKGEAM VAKLGENSEF SQVDINDAKM
101: LETSLRDVDL VVHAAGPFQQ APRCTVLEAA IKTKTAYLDV CDDTSYAFRA KSLEAEAIAA NIPALTTAGI YPGVSNVMAA EMVAAARSED KGKPEKLRFS
201: YYTAGTGGAG PTILATSFLL LGEEVTAYKQ GEKVKLRPYS GMITVDFGKG IRKRDVYLLN LPEVRSTHEV LGVPTVVARF GTAPFFWNWG MEIMTKLLPS
301: EVLRDRTKVQ QMVELFDPVV RAMDGFAGER VSMRVDLECS DGRTTVGLFS HKKLSVSVGV STAAFVAAML EGSTQPGVWF PEEPQGIAVE AREVLLKRAS
401: QGTFNFILNK PPWMVETEPK EVVLGIYV
101: LETSLRDVDL VVHAAGPFQQ APRCTVLEAA IKTKTAYLDV CDDTSYAFRA KSLEAEAIAA NIPALTTAGI YPGVSNVMAA EMVAAARSED KGKPEKLRFS
201: YYTAGTGGAG PTILATSFLL LGEEVTAYKQ GEKVKLRPYS GMITVDFGKG IRKRDVYLLN LPEVRSTHEV LGVPTVVARF GTAPFFWNWG MEIMTKLLPS
301: EVLRDRTKVQ QMVELFDPVV RAMDGFAGER VSMRVDLECS DGRTTVGLFS HKKLSVSVGV STAAFVAAML EGSTQPGVWF PEEPQGIAVE AREVLLKRAS
401: QGTFNFILNK PPWMVETEPK EVVLGIYV
Arabidopsis Description
At1g50450/F11F12_20 [Source:UniProtKB/TrEMBL;Acc:Q94BZ0]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.