Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 5
- golgi 2
- nucleus 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr11P... | |
| GSMUA_Achr2P08220_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G58730.1 | GSMUA_Achr11P... | AT2G23420.1 | 21798944 |
| AT3G58730.1 | GSMUA_Achr2P08220_001 | AT2G23420.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | cytosol | 72.62 | 92.72 |
| KRH47345 | Soybean | endoplasmic reticulum | 80.61 | 82.17 |
| KRH44559 | Soybean | endoplasmic reticulum | 80.61 | 82.17 |
| PGSC0003DMT400074548 | Potato | mitochondrion | 79.85 | 80.46 |
| Os04t0643100-01 | Rice | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 82.13 | 80.3 |
| Solyc01g073690.2.1 | Tomato | nucleus | 74.9 | 80.08 |
| Bra003352.1-P | Field mustard | mitochondrion | 78.71 | 79.31 |
| AT3G58730.1 | Thale cress | mitochondrion | 78.71 | 79.31 |
| Bra007415.1-P | Field mustard | mitochondrion | 78.71 | 79.31 |
| CDX98325 | Canola | mitochondrion | 60.84 | 79.21 |
| EES12954 | Sorghum | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 80.99 | 79.18 |
| CDY49248 | Canola | mitochondrion | 60.46 | 78.71 |
| CDX67762 | Canola | mitochondrion | 60.46 | 78.71 |
| TraesCS2B01G549600.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 80.61 | 78.52 |
| Zm00001d002105_P001 | Maize | plasma membrane | 80.23 | 78.44 |
| CDX71929 | Canola | mitochondrion | 60.46 | 78.33 |
| CDX89001 | Canola | mitochondrion | 60.46 | 78.33 |
| CDY00584 | Canola | mitochondrion | 60.08 | 78.22 |
| TraesCS2D01G521600.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 80.23 | 78.15 |
| TraesCS2A01G520400.1 | Wheat | golgi | 79.85 | 77.78 |
| Bra014555.1-P | Field mustard | mitochondrion | 59.7 | 77.72 |
| Zm00001d024242_P001 | Maize | mitochondrion, plastid | 79.47 | 77.7 |
| VIT_15s0024g00250.t01 | Wine grape | plastid | 33.46 | 68.75 |
| TraesCS6D01G135900.1 | Wheat | mitochondrion | 64.26 | 63.77 |
| TraesCS6A01G146600.1 | Wheat | mitochondrion | 63.88 | 63.4 |
| TraesCS6B01G174800.1 | Wheat | mitochondrion | 63.88 | 62.69 |
| Zm00001d024465_P001 | Maize | plastid | 63.12 | 62.41 |
| OQU79969 | Sorghum | mitochondrion | 47.15 | 60.19 |
| PGSC0003DMT400080629 | Potato | cytosol | 25.86 | 60.18 |
| HORVU6Hr1G028720.1 | Barley | vacuole | 62.36 | 59.21 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P17380_001 | EnsemblPlants:GSMUA_Achr1T17380_001 | EnsemblPlantsGene:GSMUA_Achr1G17380_001 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005215 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016787 | GO:GO:0042626 | GO:GO:0055085 | InterPro:V_ATPase_D |
| ncoils:Coil | PANTHER:PTHR11671 | PFAM:PF01813 | TIGRFAMs:TIGR00309 | UniParc:UPI000294A273 | UniProt:M0S0P6 |
| MapMan:24.1.1.2.4 | : | : | : | : | : |
Description
V-type proton ATPase subunit D [Source:GMGC_GENE;Acc:GSMUA_Achr1G17380_001]
Coordinates
chr1:-:12938088..12942842
Molecular Weight (calculated)
29316.6 Da
IEP (calculated)
10.325
GRAVY (calculated)
-0.280
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGQGQRLTV VPTVTMLGVM KARLVGATRG HALLKKKSDA LTVQFRTILK KIVSTKESMG EIMRNSSFAL TEAKYVAGDN IKHVVLESVK SASLRVRSRQ
101: ENVAGVKLPR FEHFVDHGAG DVKSDLTGLA RGGQQVQACR TAYVKAIEVL VELASLQTSF LTLDEAIKTT NRRVNALENV VKPRLENTIN YIKGELDELE
201: REDFFRLKKI QGYKKREIER QQQAAKNFVD EQYADISLKR GMSINSAHNL LVVGAEKDAD IIF
101: ENVAGVKLPR FEHFVDHGAG DVKSDLTGLA RGGQQVQACR TAYVKAIEVL VELASLQTSF LTLDEAIKTT NRRVNALENV VKPRLENTIN YIKGELDELE
201: REDFFRLKKI QGYKKREIER QQQAAKNFVD EQYADISLKR GMSINSAHNL LVVGAEKDAD IIF
001: MAGQNARLNV VPTVTMLGVM KARLVGATRG HALLKKKSDA LTVQFRALLK KIVTAKESMG DMMKTSSFAL TEVKYVAGDN VKHVVLENVK EATLKVRSRT
101: ENIAGVKLPK FDHFSEGETK NDLTGLARGG QQVRACRVAY VKAIEVLVEL ASLQTSFLTL DEAIKTTNRR VNALENVVKP KLENTISYIK GELDELERED
201: FFRLKKIQGY KRREVERQAA NAKEFAEEMV LEDISMQRGI SINAARNFLV GGAEKDSDII F
101: ENIAGVKLPK FDHFSEGETK NDLTGLARGG QQVRACRVAY VKAIEVLVEL ASLQTSFLTL DEAIKTTNRR VNALENVVKP KLENTISYIK GELDELERED
201: FFRLKKIQGY KRREVERQAA NAKEFAEEMV LEDISMQRGI SINAARNFLV GGAEKDSDII F
Arabidopsis Description
VHA-DV-type proton ATPase subunit D [Source:UniProtKB/Swiss-Prot;Acc:Q9XGM1]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.