Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX98325 | Canola | mitochondrion | 74.71 | 96.53 |
| Bra007415.1-P | Field mustard | mitochondrion | 96.17 | 96.17 |
| Bra003352.1-P | Field mustard | mitochondrion | 96.17 | 96.17 |
| CDX67762 | Canola | mitochondrion | 74.33 | 96.04 |
| CDY49248 | Canola | mitochondrion | 74.33 | 96.04 |
| CDX71929 | Canola | mitochondrion | 74.33 | 95.57 |
| CDX89001 | Canola | mitochondrion | 74.33 | 95.57 |
| CDY00584 | Canola | mitochondrion | 73.95 | 95.54 |
| Bra014555.1-P | Field mustard | mitochondrion | 73.56 | 95.05 |
| PGSC0003DMT400074548 | Potato | mitochondrion | 80.46 | 80.46 |
| Solyc01g073690.2.1 | Tomato | nucleus | 75.48 | 80.08 |
| GSMUA_Achr1P17380_001 | Banana | mitochondrion | 79.31 | 78.71 |
| KRH44559 | Soybean | endoplasmic reticulum | 77.78 | 78.68 |
| KRH47345 | Soybean | endoplasmic reticulum | 77.39 | 78.29 |
| GSMUA_AchrUn_... | Banana | cytosol | 60.92 | 77.18 |
| EES12954 | Sorghum | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 78.93 | 76.58 |
| Zm00001d024242_P001 | Maize | mitochondrion, plastid | 78.16 | 75.84 |
| Os04t0643100-01 | Rice | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 78.16 | 75.84 |
| Zm00001d002105_P001 | Maize | plasma membrane | 78.16 | 75.84 |
| TraesCS2B01G549600.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 77.39 | 74.81 |
| TraesCS2D01G521600.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 77.39 | 74.81 |
| TraesCS2A01G520400.1 | Wheat | golgi | 77.01 | 74.44 |
| VIT_12s0028g01260.t01 | Wine grape | cytosol | 80.84 | 70.57 |
| TraesCS6D01G135900.1 | Wheat | mitochondrion | 63.98 | 63.02 |
| TraesCS6A01G146600.1 | Wheat | mitochondrion | 63.22 | 62.26 |
| TraesCS6B01G174800.1 | Wheat | mitochondrion | 63.6 | 61.94 |
| Zm00001d024465_P001 | Maize | plastid | 60.92 | 59.77 |
| HORVU6Hr1G028720.1 | Barley | vacuole | 62.07 | 58.48 |
| PGSC0003DMT400080629 | Potato | cytosol | 25.29 | 58.41 |
| OQU79969 | Sorghum | mitochondrion | 45.21 | 57.28 |
Protein Annotations
| MapMan:24.1.1.2.4 | EntrezGene:825042 | UniProt:A0A178VBY5 | ProteinID:AEE79824.1 | EMBL:AF428344 | EMBL:AJ225059 |
| EMBL:AK226421 | ArrayExpress:AT3G58730 | EnsemblPlantsGene:AT3G58730 | RefSeq:AT3G58730 | TAIR:AT3G58730 | RefSeq:AT3G58730-TAIR-G |
| EnsemblPlants:AT3G58730.1 | TAIR:AT3G58730.1 | EMBL:AY124869 | ProteinID:CAB88290.1 | ncoils:Coil | GO:GO:0000325 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005774 | GO:GO:0005794 | GO:GO:0005886 | GO:GO:0006810 |
| GO:GO:0006811 | GO:GO:0008150 | GO:GO:0015992 | GO:GO:0016020 | GO:GO:0016787 | GO:GO:0042626 |
| GO:GO:0055085 | RefSeq:NP_191432.1 | ProteinID:OAP02462.1 | PFAM:PF01813 | PO:PO:0000005 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0005052 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR11671 | UniProt:Q0WWD3 |
| UniProt:Q9XGM1 | TIGRFAMs:TIGR00309 | UniParc:UPI0000000D3B | InterPro:V_ATPase_D | : | : |
Description
VHA-DV-type proton ATPase subunit D [Source:UniProtKB/Swiss-Prot;Acc:Q9XGM1]
Coordinates
chr3:-:21718188..21720053
Molecular Weight (calculated)
29060.4 Da
IEP (calculated)
10.175
GRAVY (calculated)
-0.243
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGQNARLNV VPTVTMLGVM KARLVGATRG HALLKKKSDA LTVQFRALLK KIVTAKESMG DMMKTSSFAL TEVKYVAGDN VKHVVLENVK EATLKVRSRT
101: ENIAGVKLPK FDHFSEGETK NDLTGLARGG QQVRACRVAY VKAIEVLVEL ASLQTSFLTL DEAIKTTNRR VNALENVVKP KLENTISYIK GELDELERED
201: FFRLKKIQGY KRREVERQAA NAKEFAEEMV LEDISMQRGI SINAARNFLV GGAEKDSDII F
101: ENIAGVKLPK FDHFSEGETK NDLTGLARGG QQVRACRVAY VKAIEVLVEL ASLQTSFLTL DEAIKTTNRR VNALENVVKP KLENTISYIK GELDELERED
201: FFRLKKIQGY KRREVERQAA NAKEFAEEMV LEDISMQRGI SINAARNFLV GGAEKDSDII F
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.