Factsheet for Solyc01g103940.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

plastid: 26371478

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g078380.1.1
Solyc11g005270.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G60940.1	Solyc03g078380.1.1	AT5G13810.1	21798944
AT1G60940.1	Solyc11g005270.1.1	AT5G13810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400061170	Potato	cytosol	99.45	99.72
VIT_12s0035g00310.t01	Wine grape	cytosol	89.47	90.73
KRH44077	Soybean	endoplasmic reticulum, nucleus	87.53	89.77
CDY46190	Canola	cytosol	86.7	88.92
Bra031475.1-P	Field mustard	cytosol	86.7	88.92
KRH26363	Soybean	nucleus	87.53	88.02
CDY20973	Canola	cytosol	85.87	87.57
Bra018417.1-P	Field mustard	cytosol	85.6	87.29
CDY34860	Canola	cytosol	85.04	85.99
AT1G60940.1	Thale cress	cytosol	85.87	85.87
Bra031740.1-P	Field mustard	cytosol	84.76	85.71
Bra019889.1-P	Field mustard	cytosol	85.04	85.52
CDY34668	Canola	cytosol	85.04	85.04
CDX97923	Canola	cytosol	84.76	84.53
Os04t0432000-02	Rice	cytosol	82.83	83.29
AT1G10940.2	Thale cress	cytosol	85.32	83.02
Solyc05g056550.2.1	Tomato	cytosol	80.61	81.74
Os02t0551100-01	Rice	plasma membrane	81.72	80.82
EES06943	Sorghum	cytosol	81.44	80.77
TraesCS2D01G302500.1	Wheat	cytosol, golgi	79.22	80.11
TraesCS2B01G320500.1	Wheat	cytosol	79.22	80.11
TraesCS2A01G303900.1	Wheat	cytosol	79.22	80.11
HORVU2Hr1G075470.2	Barley	cytosol	78.95	79.83
CDY20594	Canola	cytosol	66.48	78.18
KXG26327	Sorghum	cytosol	81.16	77.72
CDY19332	Canola	cytosol	85.6	74.46
Solyc08g077780.2.1	Tomato	cytosol	67.04	71.39
Bra019890.1-P	Field mustard	cytosol	19.94	69.9
Solyc04g074500.2.1	Tomato	cytosol	63.16	68.06
Solyc01g108280.2.1	Tomato	cytosol	67.04	66.85
Solyc04g012160.2.1	Tomato	cytosol	63.16	66.09
Solyc02g090390.2.1	Tomato	cytosol	63.71	65.34
CDX97922	Canola	cytosol	41.83	61.63
Solyc11g010150.1.1	Tomato	cytosol	14.13	61.45
Solyc11g010130.1.1	Tomato	cytosol	38.78	61.14
CDY03768	Canola	cytosol	86.15	52.8

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.5.2	Gene3D:3.30.200.20	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0006468
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301
GO:GO:0016740	GO:GO:0019538	GO:GO:0035556	InterPro:IPR000719	UniProt:K4B1W9	InterPro:Kinase-like_dom_sf
PFAM:PF00069	PIRSF:PIRSF000654	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24343
PANTHER:PTHR24343:SF161	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS
EnsemblPlantsGene:Solyc01g103940.2	EnsemblPlants:Solyc01g103940.2.1	UniParc:UPI00027685F8	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:+:92417344..92421661

Molecular Weight (calculated)

41594.4 Da

IEP (calculated)

5.378

GRAVY (calculated)

-0.582

Length

361 amino acids

Sequence
(BLAST)

001: MEKYELVKDI GSGNFGVARL MRNKETKELV AMKYIERGHK IDENVAREII NHKSLRHPNI IRFKEVVLTP THLAIVMEYA AGGELFERIC NAGRFSEDEA
101: RYFFQQLISG VHYCHNMQIC HRDLKLENTL LDGSAAPRLK ICDFGYSKSS LLHSRPKSTV GTPAYIAPEV LSRREYDGKL ADVWSCGVTL YVMLVGAYPF
201: EDQEDPKNFR KTIQRIMAVQ YKIPDYVHIS QDCRHLLSRI FVANSARRIT IKEIKSHPWF LKNLPRELTE AAQAAYYRKE NPTFSLQSVE EIMKIVEEAK
301: TPPPVSRSVS GFGWGGEEEE EEKEGDVEEE VEEEDDDEEE EDEYDKQVKQ AHQSLGEVRL T

Best Arabidopsis Sequence Match ( AT1G60940.2 )
(BLAST)

001: MDKYELVKDI GAGNFGVARL MRVKNSKELV AMKYIERGPK IDENVAREII NHRSLRHPNI IRFKEVVLTP THIAIAMEYA AGGELFERIC SAGRFSEDEA
101: RYFFQQLISG VSYCHAMQIC HRDLKLENTL LDGSPAPRLK ICDFGYSKSS LLHSMPKSTV GTPAYIAPEV LSRGEYDGKM ADVWSCGVTL YVMLVGAYPF
201: EDQEDPKNFK KTIQRIMAVK YKIPDYVHIS QDCKHLLSRI FVTNSNKRIT IGDIKKHPWF LKNLPRELTE IAQAAYFRKE NPTFSLQSVE EIMKIVEEAK
301: TPARVSRSIG AFGWGGGEDA EGKEEDAEEE VEEVEEEEDE EDEYDKTVKQ VHASMGEVRV S

Arabidopsis Description

SRK2BSerine/threonine-protein kinase SRK2B [Source:UniProtKB/Swiss-Prot;Acc:Q9C958]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.