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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc07g040990.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G33950.1 Solyc07g040990.2.1 AT4G26080.1 16365038
AT4G33950.1 Solyc07g040990.2.1 AT4G26080.1 19874541
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400066617 Potato cytosol, nucleus 100.0 100.0
CDY72554 Canola cytosol 74.31 93.08
KRG89230 Soybean cytosol 93.37 92.86
KRH71186 Soybean endoplasmic reticulum 90.33 92.37
AT4G33950.1 Thale cress cytosol 91.99 91.99
VIT_03s0063g01080.t01 Wine grape cytosol 91.71 91.46
KRH49772 Soybean cytosol 92.54 90.54
CDX75391 Canola cytosol 90.06 90.3
Bra011481.1-P Field mustard cytosol 90.06 90.06
KRH50231 Soybean cytosol 91.16 89.92
CDX69016 Canola cytosol 89.5 89.5
Bra017615.1-P Field mustard cytosol 88.95 88.95
Solyc02g090390.2.1 Tomato cytosol 80.66 82.95
Solyc08g077780.2.1 Tomato cytosol 67.13 71.68
Solyc04g012160.2.1 Tomato cytosol 66.02 69.28
Solyc04g074500.2.1 Tomato cytosol 62.71 67.76
Solyc01g103940.2.1 Tomato plastid 66.85 67.04
Solyc05g056550.2.1 Tomato cytosol 63.81 64.89
Solyc11g010130.1.1 Tomato cytosol 40.33 63.76
Solyc11g010150.1.1 Tomato cytosol 14.36 62.65
Protein Annotations
Gene3D:1.10.510.10MapMan:18.4.5.2MapMan:26.2.1.3Gene3D:3.30.200.20GO:GO:0000166GO:GO:0003674
GO:GO:0003824GO:GO:0004672GO:GO:0004674GO:GO:0005488GO:GO:0005515GO:GO:0005524
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005737GO:GO:0005829
GO:GO:0005975GO:GO:0005985GO:GO:0006464GO:GO:0006468GO:GO:0006629GO:GO:0006636
GO:GO:0006810GO:GO:0006950GO:GO:0006970GO:GO:0007154GO:GO:0007165GO:GO:0007275
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009414GO:GO:0009605GO:GO:0009607
GO:GO:0009628GO:GO:0009651GO:GO:0009719GO:GO:0009737GO:GO:0009789GO:GO:0009987
GO:GO:0010118GO:GO:0010119GO:GO:0010359GO:GO:0016301GO:GO:0016740GO:GO:0019432
GO:GO:0019538GO:GO:0019903GO:GO:0035556GO:GO:0040007GO:GO:0042742GO:GO:0042802
GO:GO:0046777GO:GO:0048366GO:GO:1902456GO:GO:2000377InterPro:IPR000719UniProt:K4B344
InterPro:Kinase-like_dom_sfPFAM:PF00069PIRSF:PIRSF000654ScanProsite:PS00107ScanProsite:PS00108PFscan:PS50011
PANTHER:PTHR24343PANTHER:PTHR24343:SF162InterPro:Prot_kinase_domInterPro:Protein_kinase_ATP_BSSMART:SM00220SUPFAM:SSF56112
InterPro:Ser/Thr_kinase_ASEnsemblPlantsGene:Solyc01g108280.2EnsemblPlants:Solyc01g108280.2.1UniParc:UPI0002768244SEG:seg:
Description
Serine/threonine-protein kinase SRK2E [Source:Projected from Arabidopsis thaliana (AT4G33950) UniProtKB/Swiss-Prot;Acc:Q940H6]
Coordinates
chr1:-:95631364..95635507
Molecular Weight (calculated)
41112.0 Da
IEP (calculated)
4.737
GRAVY (calculated)
-0.329
Length
362 amino acids
Sequence
(BLAST)
001: MDRTAVTVGP GMDVPIMHDS DRYELVRDIG AGNFGVARLM RDRQTNELVA VKYIERGEKI DENVKREIIN HRSLRHPNIV RFKEVILTPT HLAIVMEFAS
101: GGELFERICN AGRFSEDEAR FFFQQLISGV SYCHAMQVCH RDLKLENTLL DGSPAPRLKI CDFGYSKSSV LHSQPKSTVG TPAYIAPEVL LKKEYDGKIA
201: DVWSCGVTLY VMLVGAYPFE DPEEPKNFRK TIQRILNVQY SIPDYVHISP ECRHLISRIF VADPAKRISI PEIKNHEWFL KNLPADLMDN TTNNQFEEPD
301: QRMQSIDEIM QIITEATIPA AGTNSLNHYL TGSLDIDDDM EEDLESDPDL DIDSSGEIVY AM
Best Arabidopsis Sequence Match ( AT4G33950.1 )
(BLAST)
001: MDRPAVSGPM DLPIMHDSDR YELVKDIGSG NFGVARLMRD KQSNELVAVK YIERGEKIDE NVKREIINHR SLRHPNIVRF KEVILTPTHL AIVMEYASGG
101: ELFERICNAG RFSEDEARFF FQQLISGVSY CHAMQVCHRD LKLENTLLDG SPAPRLKICD FGYSKSSVLH SQPKSTVGTP AYIAPEVLLK KEYDGKVADV
201: WSCGVTLYVM LVGAYPFEDP EEPKNFRKTI HRILNVQYAI PDYVHISPEC RHLISRIFVA DPAKRISIPE IRNHEWFLKN LPADLMNDNT MTTQFDESDQ
301: PGQSIEEIMQ IIAEATVPPA GTQNLNHYLT GSLDIDDDME EDLESDLDDL DIDSSGEIVY AM
Arabidopsis Description
SRK2ESerine/threonine-protein kinase SRK2E [Source:UniProtKB/Swiss-Prot;Acc:Q940H6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.