Factsheet for VIT_07s0205g00160.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0824g00020.t01	Wine grape	nucleus	66.67	72.51
VIT_07s0205g00170.t01	Wine grape	cytosol	38.71	57.14
GSMUA_Achr8P05170_001	Banana	nucleus	55.38	51.24
GSMUA_Achr7P00800_001	Banana	cytosol	53.76	42.73
GSMUA_Achr2P08590_001	Banana	nucleus	52.15	36.47
VIT_00s1314g00010.t01	Wine grape	nucleus	63.44	35.33
GSMUA_Achr3P26180_001	Banana	nucleus	55.38	34.92
GSMUA_AchrUn_...	Banana	nucleus	60.22	34.78
VIT_07s0205g00180.t01	Wine grape	nucleus	65.05	34.57
VIT_07s0205g00190.t01	Wine grape	nucleus	62.37	34.32
GSMUA_Achr8P26460_001	Banana	nucleus	60.75	34.04
GSMUA_Achr7P27600_001	Banana	nucleus	60.75	33.83
VIT_03s0088g01240.t01	Wine grape	nucleus	61.83	33.43
GSMUA_Achr3P30620_001	Banana	nucleus	57.53	33.02
GSMUA_Achr4P23070_001	Banana	nucleus	54.3	32.27
KXG37671	Sorghum	nucleus	58.6	30.62
GSMUA_Achr4P03160_001	Banana	nucleus	53.23	30.28
Zm00001d033848_P004	Maize	nucleus	58.06	29.67
Os03t0725800-01	Rice	nucleus	56.45	29.25
Zm00001d013370_P001	Maize	plastid	55.38	27.61
TraesCS4B01G056600.2	Wheat	nucleus	53.76	26.74
HORVU4Hr1G009440.2	Barley	nucleus	48.92	26.69
TraesCS4D01G056900.2	Wheat	nucleus	53.76	26.67
TraesCS4A01G257900.2	Wheat	nucleus	52.69	25.99
VIT_00s0927g00010.t01	Wine grape	nucleus	29.57	24.12
GSMUA_Achr4P14580_001	Banana	nucleus	40.32	22.59
GSMUA_Achr4P03170_001	Banana	nucleus	40.32	21.99
VIT_00s0384g00020.t01	Wine grape	nucleus	14.52	13.71
VIT_02s0025g02610.t01	Wine grape	nucleus	22.58	11.63
VIT_07s0141g01060.t01	Wine grape	nucleus	26.88	10.18
VIT_15s0048g02820.t01	Wine grape	nucleus	23.66	8.85
VIT_02s0012g01320.t01	Wine grape	nucleus	30.65	8.6
VIT_15s0046g00320.t01	Wine grape	nucleus	25.27	7.78
VIT_02s0025g03450.t01	Wine grape	nucleus	21.51	6.37
VIT_07s0104g00090.t01	Wine grape	nucleus	23.66	6.32
VIT_15s0046g02560.t01	Wine grape	nucleus	20.43	5.77

Protein Annotations

EntrezGene:100251406	wikigene:100251406	MapMan:15.5.32	MapMan:25.4.1.7	Gene3D:4.10.280.10	EMBL:AM434964
ProteinID:CAN67117	ProteinID:CAN67117.1	ProteinID:CBI18610	ProteinID:CBI18610.3	ncoils:Coil	UniProt:D7SSH7
EMBL:FN594978	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	EntrezGene:LOC100251406	wikigene:LOC100251406	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR23042	PANTHER:PTHR23042:SF100	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0001BE1415	ArrayExpress:VIT_07s0205g00160
EnsemblPlantsGene:VIT_07s0205g00160	EnsemblPlants:VIT_07s0205g00160.t01	RefSeq:XP_002270448	RefSeq:XP_002270448.2	InterPro:bHLH_dom	:

Description

No Description!

Coordinates

chr7:+:15259721..15260585

Molecular Weight (calculated)

21098.7 Da

IEP (calculated)

8.867

GRAVY (calculated)

-0.351

Length

186 amino acids

Sequence
(BLAST)

001: MRRTSSHAQD HIMAERKRRE KLSQRFIALS ALVPGLKKMD KASVLGDAIK YLKQLQERVK SLEEQMKETT VESVVFIKKS QLSADDETSS CDENFDGCRE
101: DAVRDIEARV SDKNVLIRIH CKKQKGFVAK VLGEIEEHHL SVVNSSVLPF GKHAMDITVV AQMGDELQVT VKDLVNNLRL AFLKFM

Best Arabidopsis Sequence Match ( AT4G37850.2 )
(BLAST)

001: MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI

Arabidopsis Description

BHLH25Transcription factor bHLH25 [Source:UniProtKB/Swiss-Prot;Acc:Q9T072]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.