Factsheet for VIT_07s0141g01060.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19522	Soybean	nucleus	58.86	57.11
PGSC0003DMT400051672	Potato	nucleus	54.58	56.18
Solyc06g083980.1.1	Tomato	nucleus	54.18	55.77
KRH32144	Soybean	nucleus	57.03	55.56
AT4G16430.1	Thale cress	nucleus	52.75	55.46
CDY32242	Canola	nucleus	50.51	54.99
Bra038458.1-P	Field mustard	nucleus	50.31	54.77
CDY34468	Canola	nucleus	50.31	54.77
CDX90525	Canola	nucleus	47.86	51.54
Bra012720.1-P	Field mustard	nucleus	47.66	51.32
CDY09695	Canola	nucleus	46.44	46.82
TraesCS3B01G288700.1	Wheat	nucleus	33.4	37.02
TraesCS3A01G252900.1	Wheat	nucleus	34.22	36.6
HORVU3Hr1G066390.1	Barley	nucleus	34.62	36.56
Os01t0705700-01	Rice	nucleus	34.22	36.52
TraesCS3D01G253700.1	Wheat	nucleus	34.22	36.13
EES01345	Sorghum	nucleus	35.23	35.74
VIT_15s0046g00320.t01	Wine grape	nucleus	42.77	34.77
Zm00001d043706_P001	Maize	nucleus	32.99	34.69
TraesCS3B01G284800.1	Wheat	nucleus	33.4	34.53
VIT_02s0025g02610.t01	Wine grape	nucleus	21.79	29.64
VIT_00s0824g00020.t01	Wine grape	nucleus	9.37	26.9
VIT_07s0205g00160.t01	Wine grape	nucleus	10.18	26.88
VIT_15s0048g02820.t01	Wine grape	nucleus	25.46	25.15
VIT_00s0927g00010.t01	Wine grape	nucleus	11.0	23.68
VIT_02s0012g01320.t01	Wine grape	nucleus	31.77	23.53
VIT_00s0384g00020.t01	Wine grape	nucleus	8.15	20.3
VIT_03s0088g01240.t01	Wine grape	nucleus	12.42	17.73
VIT_02s0025g03450.t01	Wine grape	nucleus	21.79	17.04
VIT_00s1314g00010.t01	Wine grape	nucleus	11.41	16.77
VIT_07s0205g00180.t01	Wine grape	nucleus	11.81	16.57
VIT_07s0205g00190.t01	Wine grape	nucleus	11.2	16.27
VIT_07s0104g00090.t01	Wine grape	nucleus	21.79	15.37
VIT_15s0046g02560.t01	Wine grape	nucleus	19.55	14.57
VIT_07s0205g00170.t01	Wine grape	cytosol	3.05	11.9

Protein Annotations

EntrezGene:100254474	wikigene:100254474	MapMan:15.5.32	Gene3D:4.10.280.10	ProteinID:CCB44720	ProteinID:CCB44720.1
ncoils:Coil	UniProt:F6GXN4	EMBL:FN594965	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008150	GO:GO:0008152
GO:GO:0010629	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EntrezGene:LOC100254474
wikigene:LOC100254474	InterPro:MYC/MYB_N	PFAM:PF00010	PFAM:PF14215	PFscan:PS50888	PANTHER:PTHR11514
PANTHER:PTHR11514:SF53	SMART:SM00353	SUPFAM:SSF47459	TIGR:TC54159	UniParc:UPI00015CACA9	ArrayExpress:VIT_07s0141g01060
EnsemblPlantsGene:VIT_07s0141g01060	EnsemblPlants:VIT_07s0141g01060.t01	RefSeq:XP_002282584	RefSeq:XP_002282584.2	InterPro:bHLH_dom	SEG:seg

Description

No Description!

Coordinates

chr7:+:686589..688386

Molecular Weight (calculated)

54753.4 Da

IEP (calculated)

6.221

GRAVY (calculated)

-0.369

Length

491 amino acids

Sequence
(BLAST)

001: MGEKFWLNEE EKAMVESVLG AEGWEFLISC ASDKTHLSES GVASSDGGVQ KGLRQLVEGS NWSYAIFWRV SRVKDVLIWG DGYCREAKGE VGDGGLEEVG
101: KKKEVLKKLH EYFGVGEEDK YWAKLDLLSN IEMFYLTSMF YSFSGDLQYG PALVLKSGRW VWVVDAVGCS DQYRARSVLA RLAGFQTVVF VPVKDGVIEV
201: ASLMLVKEDE NVVKMIKGVF GGMNFGQAKV YPKIFGHELS LGSGAKSRSM SINFAPKLEG DSGFGAESYD VQGLGSNQVY GNSSNGCMNE DNEGKIFPQL
301: NQIFNAQVLV SGFEQPKDDL LPRVDERKPR KRGRKPANGR EEPLNHVEAE RQRREKLNQR FYALRAVVPN ISKMDKASLL GDAISYITDL QMKIRILEAE
401: KEIVNNKQNQ SPVPQIDFQD RQEDTVVRVS CPLDAHPVSR VIKTLKEHQV VAPEAEVSTM ENDKVLHTFS IRTQTGAAEC LKEKLVAALS K

Best Arabidopsis Sequence Match ( AT4G16430.1 )
(BLAST)

001: MGQKFWENQE DRAMVESTIG SEACDFFIST ASASNTALSK LVSPPSDSNL QQGLRHVVEG SDWDYALFWL ASNVNSSDGC VLIWGDGHCR VKKGASGEDY
101: SQQDEIKRRV LRKLHLSFVG SDEDHRLVKS GALTDLDMFY LASLYFSFRC DTNKYGPAGT YVSGKPLWAA DLPSCLSYYR VRSFLARSAG FQTVLSVPVN
201: SGVVELGSLR HIPEDKSVIE MVKSVFGGSD FVQAKEAPKI FGRQLSLGGA KPRSMSINFS PKTEDDTGFS LESYEVQAIG GSNQVYGYEQ GKDETLYLTD
301: EQKPRKRGRK PANGREEALN HVEAERQRRE KLNQRFYALR AVVPNISKMD KASLLADAIT YITDMQKKIR VYETEKQIMK RRESNQITPA EVDYQQRHDD
401: AVVRLSCPLE THPVSKVIQT LRENEVMPHD SNVAITEEGV VHTFTLRPQG GCTAEQLKDK LLASLSQ

Arabidopsis Description

BHLH3Transcription factor bHLH3 [Source:UniProtKB/Swiss-Prot;Acc:O23487]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.