Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
VIT_07s0205g00170.t01 | Wine grape | cytosol | 31.66 | 84.92 |
VIT_00s0824g00020.t01 | Wine grape | nucleus | 39.65 | 78.36 |
VIT_07s0205g00160.t01 | Wine grape | nucleus | 34.32 | 62.37 |
VIT_00s1314g00010.t01 | Wine grape | nucleus | 59.76 | 60.48 |
VIT_07s0205g00180.t01 | Wine grape | nucleus | 60.06 | 58.0 |
GSMUA_Achr8P05170_001 | Banana | nucleus | 31.36 | 52.74 |
GSMUA_Achr7P00800_001 | Banana | cytosol | 31.07 | 44.87 |
VIT_03s0088g01240.t01 | Wine grape | nucleus | 44.97 | 44.19 |
GSMUA_AchrUn_... | Banana | nucleus | 41.72 | 43.79 |
GSMUA_Achr2P08590_001 | Banana | nucleus | 34.32 | 43.61 |
VIT_00s0927g00010.t01 | Wine grape | nucleus | 29.29 | 43.42 |
GSMUA_Achr3P26180_001 | Banana | nucleus | 37.28 | 42.71 |
GSMUA_Achr7P27600_001 | Banana | nucleus | 41.42 | 41.92 |
GSMUA_Achr3P30620_001 | Banana | nucleus | 39.94 | 41.67 |
GSMUA_Achr8P26460_001 | Banana | nucleus | 40.24 | 40.96 |
GSMUA_Achr4P23070_001 | Banana | nucleus | 37.57 | 40.58 |
GSMUA_Achr4P03160_001 | Banana | nucleus | 38.17 | 39.45 |
VIT_00s0384g00020.t01 | Wine grape | nucleus | 21.01 | 36.04 |
KXG37671 | Sorghum | nucleus | 36.39 | 34.55 |
Os03t0725800-01 | Rice | nucleus | 36.69 | 34.54 |
Zm00001d033848_P004 | Maize | nucleus | 36.69 | 34.07 |
Zm00001d013370_P001 | Maize | plastid | 35.8 | 32.44 |
HORVU4Hr1G009440.2 | Barley | nucleus | 31.36 | 31.09 |
TraesCS4B01G056600.2 | Wheat | nucleus | 33.73 | 30.48 |
TraesCS4D01G056900.2 | Wheat | nucleus | 33.14 | 29.87 |
TraesCS4A01G257900.2 | Wheat | nucleus | 33.14 | 29.71 |
GSMUA_Achr4P14580_001 | Banana | nucleus | 26.63 | 27.11 |
GSMUA_Achr4P03170_001 | Banana | nucleus | 24.26 | 24.05 |
VIT_02s0025g02610.t01 | Wine grape | nucleus | 16.27 | 15.24 |
VIT_15s0048g02820.t01 | Wine grape | nucleus | 19.53 | 13.28 |
VIT_02s0012g01320.t01 | Wine grape | nucleus | 22.49 | 11.46 |
VIT_07s0141g01060.t01 | Wine grape | nucleus | 16.27 | 11.2 |
VIT_02s0025g03450.t01 | Wine grape | nucleus | 19.23 | 10.35 |
VIT_15s0046g00320.t01 | Wine grape | nucleus | 17.75 | 9.93 |
VIT_07s0104g00090.t01 | Wine grape | nucleus | 18.34 | 8.91 |
VIT_15s0046g02560.t01 | Wine grape | nucleus | 15.68 | 8.04 |
Protein Annotations
EntrezGene:100259543 | wikigene:100259543 | MapMan:15.5.32 | MapMan:25.4.1.7 | Gene3D:4.10.280.10 | ProteinID:CBI18607 |
ProteinID:CBI18607.3 | ncoils:Coil | UniProt:D7SSH4 | EMBL:FN594978 | GO:GO:0003674 | GO:GO:0005488 |
GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | EntrezGene:LOC100259543 |
wikigene:LOC100259543 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR23042 | PANTHER:PTHR23042:SF100 | SMART:SM00353 |
SUPFAM:SSF47459 | UniParc:UPI0001BE1412 | ArrayExpress:VIT_07s0205g00190 | EnsemblPlantsGene:VIT_07s0205g00190 | EnsemblPlants:VIT_07s0205g00190.t01 | RefSeq:XP_002262815 |
RefSeq:XP_002262815.2 | RefSeq:XP_002262864 | RefSeq:XP_002262864.2 | InterPro:bHLH_dom | SEG:seg | : |
Description
No Description!
Coordinates
chr7:+:15299383..15301022
Molecular Weight (calculated)
37814.6 Da
IEP (calculated)
6.885
GRAVY (calculated)
-0.530
Length
338 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDPTFIHQY SPMQSLGDSL DEFDFKSFSS ENFSSYPSTS PKSSNPHLFD SIIENFQTGG VERPRKQLKT ASGKFCPTGS KTLEASSSSS SYLISFGNSD
101: LNPIPDDTLI WNGKPKDRAA ANGYMNLESL ISQDSYQKQD HSPTYGQGTK SLSSTRNPSQ NQEHVIAERK RREKLNLQFI ALSAIIPGLK KTDKASVLGD
201: AVKYVKQLQE RVKMLEEQTT KKMVESVVTV KKYQLSDDET SLSYHDSDSS SNQPLLEIEA RVSNKDVLIR IHCQKEKGFA VKILGEVEKL HLTVINSSFT
301: AFGDYIMDIT IVAQMDNGFC TTAKDLVKNL RLAFLQFM
101: LNPIPDDTLI WNGKPKDRAA ANGYMNLESL ISQDSYQKQD HSPTYGQGTK SLSSTRNPSQ NQEHVIAERK RREKLNLQFI ALSAIIPGLK KTDKASVLGD
201: AVKYVKQLQE RVKMLEEQTT KKMVESVVTV KKYQLSDDET SLSYHDSDSS SNQPLLEIEA RVSNKDVLIR IHCQKEKGFA VKILGEVEKL HLTVINSSFT
301: AFGDYIMDIT IVAQMDNGFC TTAKDLVKNL RLAFLQFM
001: MDDSSFMDLM IDTDEYLIDD WESDFPICGE TNTNPGSESG SGTGFELLAE RPTKQMKTNN NMNSTSSSPS SSSSSGSRTS QVISFGSPDT KTNPVETSLN
101: FSNQVSMDQK VGSKRKDCVN NGGRREPHLL KEHVLAERKR RQKLNERLIA LSALLPGLKK TDKATVLEDA IKHLKQLQER VKKLEEERVV TKKMDQSIIL
201: VKRSQVYLDD DSSSYSSTCS AASPLSSSSD EVSIFKQTMP MIEARVSDRD LLIRVHCEKN KGCMIKILSS LEKFRLEVVN SFTLPFGNST LVITILTKMD
301: NKFSRPVEEV VKNIRVALAE
101: FSNQVSMDQK VGSKRKDCVN NGGRREPHLL KEHVLAERKR RQKLNERLIA LSALLPGLKK TDKATVLEDA IKHLKQLQER VKKLEEERVV TKKMDQSIIL
201: VKRSQVYLDD DSSSYSSTCS AASPLSSSSD EVSIFKQTMP MIEARVSDRD LLIRVHCEKN KGCMIKILSS LEKFRLEVVN SFTLPFGNST LVITILTKMD
301: NKFSRPVEEV VKNIRVALAE
Arabidopsis Description
NAI1NAI1 [Source:UniProtKB/TrEMBL;Acc:A0A178VWP9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.