Factsheet for VIT_02s0033g00460.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g03450.t01
VIT_07s0104g00090.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G56650.1	VIT_02s0025g03450.t01	AT1G63650.1	12917293
AT1G56650.1	VIT_02s0025g03450.t01	AT1G63650.1	15361138
AT1G56650.1	VIT_07s0104g00090.t01	AT4G09820.1	15361138
AT1G56650.1	VIT_07s0104g00090.t01	AT4G09820.1	18532977
AT1G66370.1	VIT_02s0025g03450.t01	AT1G63650.1	15361138
AT1G66370.1	VIT_07s0104g00090.t01	AT4G09820.1	15361138
AT1G66380.1	VIT_02s0025g03450.t01	AT1G63650.1	15361138
AT1G66380.1	VIT_07s0104g00090.t01	AT4G09820.1	15361138
AT1G66390.1	VIT_02s0025g03450.t01	AT1G63650.1	12917293
AT1G66390.1	VIT_02s0025g03450.t01	AT1G63650.1	15361138
AT1G66390.1	VIT_07s0104g00090.t01	AT4G09820.1	15361138

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0033g00430.t01	Wine grape	nucleus	89.95	79.91
VIT_02s0033g00400.t01	Wine grape	nucleus	86.43	76.79
VIT_02s0033g00450.t01	Wine grape	nucleus	41.71	52.53
CDY72660	Canola	nucleus	33.67	51.15
AT1G66380.1	Thale cress	nucleus	34.67	49.64
VIT_02s0033g00370.t01	Wine grape	nucleus	23.12	48.94
CDY72006	Canola	nucleus	36.68	41.71
VIT_02s0033g00410.t01	Wine grape	nucleus	51.76	41.2
KRH01212	Soybean	nucleus	36.68	38.62
VIT_02s0033g00390.t01	Wine grape	nucleus	50.25	37.74
VIT_14s0006g01280.t01	Wine grape	nucleus	45.23	37.04
KRH01217	Soybean	nucleus	41.71	35.93
KRH40049	Soybean	nucleus	41.71	35.02
CDY70737	Canola	nucleus	39.7	34.65
VIT_14s0006g01290.t01	Wine grape	nucleus	42.21	34.57
KRH40047	Soybean	nucleus	40.7	34.32
CDY49630	Canola	nucleus	40.2	33.47
AT1G66370.1	Thale cress	nucleus	41.21	33.33
KRH40053	Soybean	nucleus	39.2	33.19
Bra001917.1-P	Field mustard	nucleus	41.21	32.93
CDX96151	Canola	nucleus	40.7	32.79
AT1G66390.1	Thale cress	nucleus	40.7	32.53
Bra004162.1-P	Field mustard	nucleus	40.2	32.39
CDY58386	Canola	nucleus, plastid	40.2	32.13
CDY55040	Canola	nucleus	40.2	32.13
Bra039763.1-P	Field mustard	nucleus	39.7	31.73
Solyc10g086270.1.1	Tomato	nucleus	39.7	30.5
AT1G56650.1	Thale cress	nucleus	37.69	30.24
Solyc10g086290.1.1	Tomato	nucleus	40.2	30.19
KRG93566	Soybean	nucleus	38.19	30.04
VIT_14s0006g01340.t01	Wine grape	nucleus	35.68	29.71
Solyc10g086250.1.1	Tomato	nucleus	39.2	28.36
CDY53214	Canola	nucleus	39.2	28.16
Solyc10g086260.1.1	Tomato	nucleus	38.69	28.1
VIT_01s0011g01190.t01	Wine grape	nucleus	31.16	28.05
VIT_01s0011g01200.t01	Wine grape	nucleus	28.64	27.4
PGSC0003DMT400036284	Potato	nucleus	20.1	18.87
PGSC0003DMT400036281	Potato	extracellular	19.6	18.75
KRH21221	Soybean	nucleus	20.6	17.45
KRH40048	Soybean	cytosol	7.54	14.42

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100244722	MapMan:15.5.2.1	ProteinID:CBI37401	ProteinID:CBI37401.3	UniProt:D7U3T2
EMBL:FN596505	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017877	InterPro:IPR017930
EntrezGene:LOC100244722	InterPro:Myb-like_dom	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS50090	PFscan:PS51294
PANTHER:PTHR10641	PANTHER:PTHR10641:SF952	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0001BE462C
ArrayExpress:VIT_02s0033g00460	EnsemblPlantsGene:VIT_02s0033g00460	EnsemblPlants:VIT_02s0033g00460.t01	RefSeq:XP_002265208	RefSeq:XP_002265208.1	RefSeq:XP_019081942.1

Description

No Description!

Coordinates

chr2:-:14313417..14314479

Molecular Weight (calculated)

22906.5 Da

IEP (calculated)

9.209

GRAVY (calculated)

-0.525

Length

199 amino acids

Sequence
(BLAST)

001: MEKKSGIWFP LRAGLSRCRK SCRLRWFNYL KPNIKRGKFA SDEVDLMIRL HKLLGNRWSL IAGRLPGRTA NDVKNYWHHH RFRKMVPIQE KGKDKAQTNS
101: ENTLIKPKPC KLFLGFTFKT TAVDAYETQG STCSELQPTL VQPNQDILWW ESLFADHTIE DQELIASLLA DETASAVDTN GGGNYDFPFE MGLIDEVMR

Best Arabidopsis Sequence Match ( AT1G66370.1 )
(BLAST)

001: MGESPKGLRK GTWTTEEDIL LRQCIDKYGE GKWHRVPLRT GLNRCRKSCR LRWLNYLKPS IKRGKLCSDE VDLVLRLHKL LGNRWSLIAG RLPGRTANDV
101: KNYWNTHLSK KHDERCCKTK MINKNITSHP TSSAQKIDVL KPRPRSFSDK NSCNDVNILP KVDVVPLHLG LNNNYVCESS ITCNKDEQKD KLININLLDG
201: DNMWWESLLE ADVLGPEATE TAKGVTLPLD FEQIWARFDE ETLELN

Arabidopsis Description

MYB113Transcription factor MYB113 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNV9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.