CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95511
KRH32008
KRH67189
KRH71432

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G56650.1	KRG95511	AT4G09820.1	15361138
AT1G56650.1	KRH32008	AT4G09820.1	15361138
AT1G56650.1	KRH67189	AT4G09820.1	15361138
AT1G56650.1	KRH71432	AT4G09820.1	15361138
AT1G56650.1	KRG95511	AT4G09820.1	18532977
AT1G56650.1	KRH32008	AT4G09820.1	18532977
AT1G56650.1	KRH67189	AT4G09820.1	18532977
AT1G56650.1	KRH71432	AT4G09820.1	18532977
AT1G66370.1	KRG95511	AT4G09820.1	15361138
AT1G66370.1	KRH32008	AT4G09820.1	15361138
AT1G66370.1	KRH67189	AT4G09820.1	15361138
AT1G66370.1	KRH71432	AT4G09820.1	15361138
AT1G66380.1	KRG95511	AT4G09820.1	15361138
AT1G66380.1	KRH32008	AT4G09820.1	15361138
AT1G66380.1	KRH67189	AT4G09820.1	15361138
AT1G66380.1	KRH71432	AT4G09820.1	15361138
AT1G66390.1	KRG95511	AT4G09820.1	15361138
AT1G66390.1	KRH32008	AT4G09820.1	15361138
AT1G66390.1	KRH67189	AT4G09820.1	15361138
AT1G66390.1	KRH71432	AT4G09820.1	15361138

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40049	Soybean	nucleus	79.81	35.02
KRH40053	Soybean	nucleus	62.5	27.66
KRH40047	Soybean	nucleus	62.5	27.54
KRH01212	Soybean	nucleus	47.12	25.93
KRH01217	Soybean	nucleus	55.77	25.11
VIT_14s0006g01280.t01	Wine grape	nucleus	24.04	10.29
KRG93566	Soybean	nucleus	24.04	9.88
VIT_14s0006g01290.t01	Wine grape	nucleus	23.08	9.88
VIT_14s0006g01340.t01	Wine grape	nucleus	20.19	8.79
KRH21221	Soybean	nucleus	19.23	8.51
VIT_02s0033g00410.t01	Wine grape	nucleus	20.19	8.4
VIT_02s0033g00390.t01	Wine grape	nucleus	21.15	8.3
PGSC0003DMT400036284	Potato	nucleus	16.35	8.02
VIT_02s0033g00460.t01	Wine grape	mitochondrion	14.42	7.54
Bra004162.1-P	Field mustard	nucleus	17.31	7.29
CDX96151	Canola	nucleus	17.31	7.29
Solyc10g086250.1.1	Tomato	nucleus	18.27	6.91
VIT_02s0033g00430.t01	Wine grape	nucleus	14.42	6.7
VIT_02s0033g00400.t01	Wine grape	nucleus	14.42	6.7
Bra001917.1-P	Field mustard	nucleus	15.38	6.43
CDY49630	Canola	nucleus	14.42	6.28
Solyc10g086270.1.1	Tomato	nucleus	15.38	6.18
CDY70737	Canola	nucleus	13.46	6.14
AT1G66370.1	Thale cress	nucleus	14.42	6.1
Bra039763.1-P	Field mustard	nucleus	14.42	6.02
AT1G66390.1	Thale cress	nucleus	14.42	6.02
CDY58386	Canola	nucleus, plastid	14.42	6.02
CDY55040	Canola	nucleus	14.42	6.02
CDY53214	Canola	nucleus	15.38	5.78
Solyc10g086290.1.1	Tomato	nucleus	14.42	5.66
AT1G56650.1	Thale cress	nucleus	13.46	5.65
Solyc10g086260.1.1	Tomato	nucleus	14.42	5.47
KRH00082	Soybean	nucleus	11.54	5.31
PGSC0003DMT400036281	Potato	extracellular	9.62	4.81
CDY72006	Canola	nucleus	7.69	4.57
KRH49229	Soybean	nucleus	9.62	4.42
VIT_02s0033g00450.t01	Wine grape	nucleus	5.77	3.8
CDY72660	Canola	nucleus	2.88	2.29
VIT_02s0033g00370.t01	Wine grape	nucleus	1.92	2.13
AT1G66380.1	Thale cress	nucleus	1.92	1.44

Protein Annotations

EMBL:ACUP02006014	EnsemblPlants:KRH40048	EnsemblPlantsGene:GLYMA_09G235000	ProteinID:KRH40048	ProteinID:KRH40048.1	UniParc:UPI0006ED7186
UniProt:A0A0R0ICG1	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:45747557..45747873

Molecular Weight (calculated)

11263.9 Da

IEP (calculated)

4.186

GRAVY (calculated)

-0.703

Length

104 amino acids

Sequence
(BLAST)

001: KQADEAKSTV KQHEVIKPVP RTLSKAYPWL QGKLINSSKV GVSEEGATSI SGSGNLWETL SDDKEDSEEG NNNKCFFGGE DGALDLWGEE LNSIACDFLT
101: QGET

Best Arabidopsis Sequence Match ( AT3G14810.1 )
(BLAST)

001: MAAVDSTDRR DFIVNINGQE SGAVGATGSS SNAEGGNIWK ESSYDFWDGE KGKNDKKGDD EDEDGGSFHF RQRGERRHSS AELSDPPSKL IGQFLHKQRA
101: SGDEISLDVE LNMAELQSNT PPRPATASNT PRRGLTTISE SSSPVKTKVK ADAVRRRQNR TSLGGSSDEE GRNRDEAEVL KCGSKKPMLS RNKTKSRLQD
201: PPTPTHPAID KTEMKSGRRS GIFKSGFLGK SPKAGTPGRN GFEEEEEEDP FLDEDLPEEF KRDKLSFWVF LEWISLVLIV TSLVCSLTIH NLQRKTWWKL
301: DLWKWEVTVL VLICGRLVSS WIVRIIVFLV EKNFTWRKRV LYFVYGVRKS VQNCLWLGLV LLAWHFLFDK KVERETRSTA LRYVTRVLVC LLVALIIWLV
401: KTILVKVLAS SFHMSTYFDR IQESLFTQYV IETLSGPPLM EIQRMEEEEQ QVAEDVKSLE KLAGAKLPPA LKATVKSFMK VGKSPGLNRI GSKRGEDGEG
501: IRIDQLKRMN TKNVSAWNMK RLMNIILKGA ISTLDQNMQD TTQEDEDATH IRSEYEAKCA ARKIFHNVTE PGSRYIYLED FLRFLCEEEA ERAMALFEGA
601: SESDKISKSC LKNWVVKAFR ERRALALTLN DTKTAVDRLH RIINVVIGII IIIIWLLILG IATTRFLLVL SSQLLLVAFV FGNSCKTIFE AIIFLFVMHP
701: FDVGDRCEID GVQLVVEEMN ILTTVFLRYD NQKIIYPNSV LGTKPIANYY RSPDMGDAVE FCVHIATPPE KITAIKQRIL SYVDNKKDYW YPAPMIVFLS
801: MDDLNSVKIA VWLTHRMNHQ DMGERYIRRG LLLEEVGKTC RELDIEYRLY PLNINVRSLP PTANPTSSDR IPPSWMQQRG P

Arabidopsis Description

MSL5Mechanosensitive ion channel protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LH74]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.