CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95511
KRH32008
KRH67189
KRH71432

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G56650.1	KRG95511	AT4G09820.1	15361138
AT1G56650.1	KRH32008	AT4G09820.1	15361138
AT1G56650.1	KRH67189	AT4G09820.1	15361138
AT1G56650.1	KRH71432	AT4G09820.1	15361138
AT1G56650.1	KRG95511	AT4G09820.1	18532977
AT1G56650.1	KRH32008	AT4G09820.1	18532977
AT1G56650.1	KRH67189	AT4G09820.1	18532977
AT1G56650.1	KRH71432	AT4G09820.1	18532977
AT1G66370.1	KRG95511	AT4G09820.1	15361138
AT1G66370.1	KRH32008	AT4G09820.1	15361138
AT1G66370.1	KRH67189	AT4G09820.1	15361138
AT1G66370.1	KRH71432	AT4G09820.1	15361138
AT1G66380.1	KRG95511	AT4G09820.1	15361138
AT1G66380.1	KRH32008	AT4G09820.1	15361138
AT1G66380.1	KRH67189	AT4G09820.1	15361138
AT1G66380.1	KRH71432	AT4G09820.1	15361138
AT1G66390.1	KRG95511	AT4G09820.1	15361138
AT1G66390.1	KRH32008	AT4G09820.1	15361138
AT1G66390.1	KRH67189	AT4G09820.1	15361138
AT1G66390.1	KRH71432	AT4G09820.1	15361138

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0033g00370.t01	Wine grape	nucleus	24.11	64.89
CDY72660	Canola	nucleus	31.62	61.07
KRH21221	Soybean	nucleus	56.52	60.85
AT1G66380.1	Thale cress	nucleus	33.2	60.43
KRH01212	Soybean	nucleus	42.69	57.14
VIT_02s0033g00450.t01	Wine grape	nucleus	35.18	56.33
KRH40047	Soybean	nucleus	49.41	52.97
KRH40053	Soybean	nucleus	48.62	52.34
KRH01217	Soybean	nucleus	47.43	51.95
KRH40049	Soybean	nucleus	48.62	51.9
CDY72006	Canola	nucleus	35.18	50.86
VIT_02s0033g00400.t01	Wine grape	nucleus	36.76	41.52
VIT_02s0033g00430.t01	Wine grape	nucleus	36.76	41.52
CDY70737	Canola	nucleus	37.15	41.23
VIT_14s0006g01290.t01	Wine grape	nucleus	39.53	41.15
VIT_14s0006g01280.t01	Wine grape	nucleus	39.53	41.15
KRH49229	Soybean	nucleus	35.97	40.27
VIT_02s0033g00410.t01	Wine grape	nucleus	39.53	40.0
CDY49630	Canola	nucleus	37.55	39.75
AT1G66390.1	Thale cress	nucleus	38.74	39.36
CDY55040	Canola	nucleus	38.34	38.96
Bra039763.1-P	Field mustard	nucleus	38.34	38.96
VIT_14s0006g01340.t01	Wine grape	nucleus	36.76	38.91
CDY58386	Canola	nucleus, plastid	37.94	38.55
KRH00082	Soybean	nucleus	34.39	38.5
Solyc10g086270.1.1	Tomato	nucleus	39.13	38.22
VIT_02s0033g00460.t01	Wine grape	mitochondrion	30.04	38.19
Bra004162.1-P	Field mustard	nucleus	37.15	38.06
AT1G56650.1	Thale cress	nucleus	37.15	37.9
Bra001917.1-P	Field mustard	nucleus	37.15	37.75
CDX96151	Canola	nucleus	36.76	37.65
AT1G66370.1	Thale cress	nucleus	36.36	37.4
Solyc10g086250.1.1	Tomato	nucleus	40.32	37.09
VIT_02s0033g00390.t01	Wine grape	nucleus	37.55	35.85
Solyc10g086260.1.1	Tomato	nucleus	38.74	35.77
Solyc10g086290.1.1	Tomato	nucleus	37.15	35.47
CDY53214	Canola	nucleus	35.18	32.13
KRH40048	Soybean	cytosol	9.88	24.04
PGSC0003DMT400036284	Potato	nucleus	18.18	21.7
PGSC0003DMT400036281	Potato	extracellular	17.79	21.63

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100306270	MapMan:15.5.2.1	EMBL:ACUP02011596	EnsemblPlantsGene:GLYMA_19G025000	GO:GO:0000981
GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:K7MW48	EnsemblPlants:KRG93566	ProteinID:KRG93566
ProteinID:KRG93566.1	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF526
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000233DEDF	SEG:seg	:

Description

hypothetical protein

Coordinates

chr19:+:3117635..3120314

Molecular Weight (calculated)

29038.3 Da

IEP (calculated)

8.911

GRAVY (calculated)

-0.800

Length

253 amino acids

Sequence
(BLAST)

001: MDGSACVRKG LWSEVEDTLL RTCVRQYGEG QWHLVPTRAG LNRCRKSCRL RWLNYLKPNI KRGEFTEDEV DLMQRLHNLL GNRWSLIAGR LPGRTPNDVK
101: NYWNTYIRRK VSSSHKVVIN EKQKKTTVKP HVVIKPKART FSRPSPSGLR GSSVLREEGG ESGAKHCSTH HQACAASSEY INNWSTDQWW KTMMHDKGDN
201: LDNNQCLLGY QDEVGKLVKD NNCDENLASL TTQEGEFLIE GQNWSDFFLD TNL

Best Arabidopsis Sequence Match ( AT1G56650.1 )
(BLAST)

001: MEGSSKGLRK GAWTTEEDSL LRQCINKYGE GKWHQVPVRA GLNRCRKSCR LRWLNYLKPS IKRGKLSSDE VDLLLRLHRL LGNRWSLIAG RLPGRTANDV
101: KNYWNTHLSK KHEPCCKIKM KKRDITPIPT TPALKNNVYK PRPRSFTVNN DCNHLNAPPK VDVNPPCLGL NINNVCDNSI IYNKDKKKDQ LVNNLIDGDN
201: MWLEKFLEES QEVDILVPEA TTTEKGDTLA FDVDQLWSLF DGETVKFD

Arabidopsis Description

MYB75Transcription factor MYB75 [Source:UniProtKB/Swiss-Prot;Acc:Q9FE25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.