Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY72660 | Canola | nucleus | 46.21 | 97.71 |
| Bra001917.1-P | Field mustard | nucleus | 80.14 | 89.16 |
| AT1G66380.1 | Thale cress | nucleus | 42.6 | 84.89 |
| CDY72006 | Canola | nucleus | 49.46 | 78.29 |
| CDX96151 | Canola | nucleus | 65.7 | 73.68 |
| CDY58386 | Canola | nucleus, plastid | 66.06 | 73.49 |
| CDY55040 | Canola | nucleus | 65.34 | 72.69 |
| AT1G66390.1 | Thale cress | nucleus | 63.9 | 71.08 |
| CDY49630 | Canola | nucleus | 60.29 | 69.87 |
| CDY70737 | Canola | nucleus | 56.32 | 68.42 |
| AT1G56650.1 | Thale cress | nucleus | 61.01 | 68.15 |
| VIT_02s0033g00370.t01 | Wine grape | nucleus | 20.22 | 59.57 |
| AT1G66370.1 | Thale cress | nucleus | 52.71 | 59.35 |
| VIT_02s0033g00450.t01 | Wine grape | nucleus | 32.85 | 57.59 |
| KRH01212 | Soybean | nucleus | 32.49 | 47.62 |
| VIT_14s0006g01280.t01 | Wine grape | nucleus | 38.99 | 44.44 |
| VIT_02s0033g00430.t01 | Wine grape | nucleus | 34.3 | 42.41 |
| VIT_02s0033g00400.t01 | Wine grape | nucleus | 34.3 | 42.41 |
| VIT_14s0006g01290.t01 | Wine grape | nucleus | 36.82 | 41.98 |
| KRH40053 | Soybean | nucleus | 34.3 | 40.43 |
| VIT_02s0033g00410.t01 | Wine grape | nucleus | 36.1 | 40.0 |
| KRH40047 | Soybean | nucleus | 33.94 | 39.83 |
| VIT_02s0033g00460.t01 | Wine grape | mitochondrion | 28.16 | 39.2 |
| KRH01217 | Soybean | nucleus | 32.13 | 38.53 |
| KRH40049 | Soybean | nucleus | 32.85 | 38.4 |
| Solyc10g086270.1.1 | Tomato | nucleus | 35.74 | 38.22 |
| Solyc10g086250.1.1 | Tomato | nucleus | 37.91 | 38.18 |
| VIT_02s0033g00390.t01 | Wine grape | nucleus | 36.46 | 38.11 |
| Solyc10g086290.1.1 | Tomato | nucleus | 36.1 | 37.74 |
| VIT_14s0006g01340.t01 | Wine grape | nucleus | 32.13 | 37.24 |
| Solyc10g086260.1.1 | Tomato | nucleus | 36.82 | 37.23 |
| KRG93566 | Soybean | nucleus | 32.13 | 35.18 |
| PGSC0003DMT400036284 | Potato | nucleus | 17.33 | 22.64 |
| PGSC0003DMT400036281 | Potato | extracellular | 16.97 | 22.6 |
| KRH21221 | Soybean | nucleus | 16.97 | 20.0 |
| KRH40048 | Soybean | cytosol | 5.78 | 15.38 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078IUX0 | UniProt:A0A078IUX0 | EnsemblPlants:CDY53214 | ProteinID:CDY53214 |
| ProteinID:CDY53214.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00010217001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF526 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EE79FB | SEG:seg |
Description
BnaC03g74080DBnaC03g74080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IUX0]
Coordinates
chrLK033175:+:65649..67373
Molecular Weight (calculated)
31454.8 Da
IEP (calculated)
9.773
GRAVY (calculated)
-0.624
Length
277 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDSSKGLTK GAWTAEEDSL LRRCIDKYGE GKWHQIPLRA GFLSVHLRAP GYAKWSGRRE AAHVKPLVAG ARTRVAGTSA EVPLPPDYEA RCRKSCRLRW
101: LNYLKPTIKR GKLSSDEVDL LLRLHKLLGN RWSLIAGRLP GRTANDIKNY WNTHLSKKHE PCCKTKMKKR NVTFSSTTPA QKIDVFKPRP RLFTVNNGCS
201: HLHGLPEYDI CNKAGEKYEL FSNLMDGENM WWESLLEESK QPDGLVPKGT ATKMGATFAF DVEQLWNMLD GETVELD
101: LNYLKPTIKR GKLSSDEVDL LLRLHKLLGN RWSLIAGRLP GRTANDIKNY WNTHLSKKHE PCCKTKMKKR NVTFSSTTPA QKIDVFKPRP RLFTVNNGCS
201: HLHGLPEYDI CNKAGEKYEL FSNLMDGENM WWESLLEESK QPDGLVPKGT ATKMGATFAF DVEQLWNMLD GETVELD
001: MEGSSKGLRK GAWTTEEDSL LRQCINKYGE GKWHQVPVRA GLNRCRKSCR LRWLNYLKPS IKRGKLSSDE VDLLLRLHRL LGNRWSLIAG RLPGRTANDV
101: KNYWNTHLSK KHEPCCKIKM KKRDITPIPT TPALKNNVYK PRPRSFTVNN DCNHLNAPPK VDVNPPCLGL NINNVCDNSI IYNKDKKKDQ LVNNLIDGDN
201: MWLEKFLEES QEVDILVPEA TTTEKGDTLA FDVDQLWSLF DGETVKFD
101: KNYWNTHLSK KHEPCCKIKM KKRDITPIPT TPALKNNVYK PRPRSFTVNN DCNHLNAPPK VDVNPPCLGL NINNVCDNSI IYNKDKKKDQ LVNNLIDGDN
201: MWLEKFLEES QEVDILVPEA TTTEKGDTLA FDVDQLWSLF DGETVKFD
Arabidopsis Description
MYB75Transcription factor MYB75 [Source:UniProtKB/Swiss-Prot;Acc:Q9FE25]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.