Factsheet for VIT_01s0011g01190.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0033g00370.t01	Wine grape	nucleus	22.17	52.13
VIT_01s0011g01200.t01	Wine grape	nucleus	47.51	50.48
VIT_02s0033g00450.t01	Wine grape	nucleus	32.13	44.94
VIT_14s0006g01290.t01	Wine grape	nucleus	39.82	36.21
VIT_02s0033g00400.t01	Wine grape	nucleus	35.29	34.82
VIT_14s0006g01340.t01	Wine grape	nucleus	37.56	34.73
VIT_14s0006g01280.t01	Wine grape	nucleus	38.01	34.57
VIT_02s0033g00430.t01	Wine grape	nucleus	33.94	33.48
VIT_02s0033g00410.t01	Wine grape	nucleus	36.65	32.4
KRH00082	Soybean	nucleus	33.03	32.3
VIT_02s0033g00460.t01	Wine grape	mitochondrion	28.05	31.16
KRH49229	Soybean	nucleus	31.22	30.53
VIT_02s0033g00390.t01	Wine grape	nucleus	35.29	29.43

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100260989	wikigene:100260989	EntrezGene:109121493	MapMan:15.5.2.1	ProteinID:CBI27226
ProteinID:CBI27226.3	UniProt:D7T9Q4	EMBL:FN595752	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf
InterPro:IPR017930	EntrezGene:LOC100260989	wikigene:LOC100260989	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR10641	PANTHER:PTHR10641:SF526	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0001BE2CD3
ArrayExpress:VIT_01s0011g01190	EnsemblPlantsGene:VIT_01s0011g01190	EnsemblPlants:VIT_01s0011g01190.t01	RefSeq:XP_002275663	RefSeq:XP_002275663.2	RefSeq:XP_019078505.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:1017874..1019921

Molecular Weight (calculated)

26121.5 Da

IEP (calculated)

5.850

GRAVY (calculated)

-1.001

Length

221 amino acids

Sequence
(BLAST)

001: MKRREREDHH HSNTALRKGT WSEEEDRLLR EYVDKYGQGN WKHITSKTGL RRCRKSCRLR WLNYLRPDIK RGSFGVDEDD LIIRLHRLLG NRWTLIAGRI
101: PGRTSNDIKN YWNTYLSKKI QSEADKSAGL VKHNTCTSAV HSETLGSEFE TCSEQKQGDE EEEDTVSFWR RLLLEGEYRE LDLRVKNKEI LQVEHEEEDD
201: DDLFQGLDDL LHDVDILDCF A

Best Arabidopsis Sequence Match ( AT1G66370.1 )
(BLAST)

001: MGESPKGLRK GTWTTEEDIL LRQCIDKYGE GKWHRVPLRT GLNRCRKSCR LRWLNYLKPS IKRGKLCSDE VDLVLRLHKL LGNRWSLIAG RLPGRTANDV
101: KNYWNTHLSK KHDERCCKTK MINKNITSHP TSSAQKIDVL KPRPRSFSDK NSCNDVNILP KVDVVPLHLG LNNNYVCESS ITCNKDEQKD KLININLLDG
201: DNMWWESLLE ADVLGPEATE TAKGVTLPLD FEQIWARFDE ETLELN

Arabidopsis Description

MYB113Transcription factor MYB113 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNV9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.