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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 7
  • endoplasmic reticulum 5
  • vacuole 6
  • plasma membrane 5
  • golgi 5
  • cytosol 2
  • peroxisome 1
  • mitochondrion 1
  • unclear 1
  • plastid 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory, unclear
BaCelLo:secretory
EpiLoc:vacuole
MultiLoc:cytosol
Plant-mPloc:cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory, unclear
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX98027 Canola extracellular 95.52 95.52
GSMUA_Achr10P... Banana cytosol 80.6 18.69
GSMUA_Achr6P11830_001 Banana cytosol 80.6 15.79
Bra026947.1-P Field mustard cytosol 80.6 14.14
Bra029410.1-P Field mustard cytosol 20.9 13.73
Os02t0524600-01 Rice cytoskeleton, cytosol, nucleus 74.63 12.17
EES06890 Sorghum cytoskeleton, cytosol, nucleus 73.13 11.78
OQU85036 Sorghum cytoskeleton, cytosol, nucleus 73.13 11.78
Zm00001d016653_P001 Maize cytoskeleton, cytosol, nucleus 73.13 11.78
TraesCS6B01G221400.3 Wheat cytoskeleton, cytosol, nucleus 70.15 11.38
TraesCS6A01G193300.1 Wheat cytosol 70.15 11.33
Bra009770.1-P Field mustard cytosol 56.72 11.28
HORVU6Hr1G044360.6 Barley cytosol, nucleus, plastid 70.15 11.14
Bra029411.1-P Field mustard cytosol 11.94 6.67
Protein Annotations
EnsemblPlants:Bra019798.1EnsemblPlants:Bra019798.1-PEnsemblPlantsGene:Bra019798PANTHER:PTHR19919PANTHER:PTHR19919:SF9UniParc:UPI000253EC69
UniProt:M4DTF5MapMan:35.2::::
Description
AT1G12910 (E=1e-013) ATAN11, LWD1 | ATAN11 (ANTHOCYANIN11); nucleotide binding
Coordinates
chrA06:+:4363304..4363507
Molecular Weight (calculated)
7188.6 Da
IEP (calculated)
4.057
GRAVY (calculated)
0.442
Length
67 amino acids
Sequence
(BLAST)
1: MIKKVFDIAW GGVAVFASVS ADEGQQVGEG GLDLILAYTV GAEIEWSSSQ PDWVAIAFST KMQILRV
Best Arabidopsis Sequence Match ( AT1G12910.1 )
(BLAST)
001: MGTSSDPIQD GSDEQQKRSE IYTYEAPWHI YAMNWSVRRD KKYRLAITSL LEQYPNRVEI VQLDESNGEI RSDPNLSFEH PYPPTKTIFI PDKECQRPDL
101: LATSSDFLRL WRIADDHSRV ELKSCLNSNK NSEFCGPLTS FDWNEAEPRR IGTSSTDTTC TIWDIEREAV DTQLIAHDKE VFDIAWGGVG VFASVSADGS
201: VRVFDLRDKE HSTIIYESSE PDTPLVRLGW NKQDPRYMAT IIMDSAKVVV LDIRFPALPV VELQRHQASV NAIAWAPHSS CHICTAGDDS QALIWDISSM
301: GQHVEGGLDP ILAYTAGAEI EQLQWSSSQP DWVAIAFSTK LQILRV
Arabidopsis Description
LWD1WD repeat-containing protein LWD1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPV9]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.