CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU85036	Sorghum	cytoskeleton, cytosol, nucleus	100.0	100.0
Zm00001d016653_P001	Maize	cytoskeleton, cytosol, nucleus	93.51	93.51
Os02t0524600-01	Rice	cytoskeleton, cytosol, nucleus	85.34	86.37
GSMUA_Achr10P...	Banana	cytosol	57.69	83.05
TraesCS6A01G193300.1	Wheat	cytosol	79.33	79.52
VIT_14s0068g00660.t01	Wine grape	cytosol	65.38	79.07
KRH06773	Soybean	nucleus	65.38	79.07
KRG94752	Soybean	cytosol	65.14	78.78
TraesCS6B01G221400.3	Wheat	cytoskeleton, cytosol, nucleus	78.12	78.69
AT1G12910.1	Thale cress	cytosol	65.14	78.32
CDY16039	Canola	cytosol	64.42	77.46
CDY26600	Canola	cytosol	64.18	77.17
PGSC0003DMT400025654	Potato	cytosol	64.18	76.95
Solyc04g082470.1.1	Tomato	nucleus	63.7	76.37
GSMUA_Achr6P11830_001	Banana	cytosol	62.02	75.44
AT3G26640.1	Thale cress	cytosol	61.78	74.28
Bra019798.1-P	Field mustard	extracellular	11.78	73.13
HORVU6Hr1G044360.6	Barley	cytosol, nucleus, plastid	73.32	72.27
Bra026947.1-P	Field mustard	cytosol	65.14	70.94
CDX98027	Canola	extracellular	11.3	70.15
VIT_03s0017g02150.t01	Wine grape	cytosol	14.18	60.82
CDY39498	Canola	cytosol	15.38	54.24
EES05725	Sorghum	cytosol	39.18	51.26
CDY70646	Canola	nucleus	11.54	45.71
CDY65574	Canola	nucleus	11.54	45.71
CDY70647	Canola	cytosol	14.42	45.45
CDY65575	Canola	cytosol	14.18	44.7
CDY19411	Canola	extracellular, plastid	9.62	44.44

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EntrezGene:8059609	UniProt:C5XTB5	EnsemblPlants:EES06890	ProteinID:EES06890
ProteinID:EES06890.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	ProteinID:OQU85036.1
PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19919	PANTHER:PTHR19919:SF9
SMART:SM00320	EnsemblPlantsGene:SORBI_3004G161600	SUPFAM:SSF50978	unigene:Sbi.14676	UniParc:UPI0001A85B58	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002453914.1	SEG:seg

Description

hypothetical protein

Coordinates

chr4:-:51052139..51055263

Molecular Weight (calculated)

44231.2 Da

IEP (calculated)

4.558

GRAVY (calculated)

-0.357

Length

416 amino acids

Sequence
(BLAST)

001: MGGAGEGDAW ADQEQGNGGG SRGVGGGGGG EAKRSEIYTY EAAWHIYAMN WSVRRDKKYR LAIASLLEQV TNRVEVVQLD EASGDIAPVL TFDHQYPPTK
101: TMFMPDPHAL RPDLLATSAD HLRIWRIPSP DDADDGAASA NNNNGSVRCN GTPQPGIELR CELNGNRNSD YCGPLTSFDW NDADPRRIGT SSIDTTCTIW
201: DVEREAVDTQ LIAHDKEVYD IAWGGAGVFA SVSADGSVRV FDLRDKEHST IIYESGSGGG GGGSNSGAGD GGTASPTPLV RLGWNKQDPR YMATIIMDSP
301: KVVVLDIRYP TLPVVELHRH HAPVNAIAWA PHSSCHICTA GDDMQALIWD LSSMGTGSNG SGNGNGNAAA AAAAEGGLDP ILAYTAGAEI EQLQWSATQP
401: DWVAIAFANK LQILRV

Best Arabidopsis Sequence Match ( AT1G12910.1 )
(BLAST)

001: MGTSSDPIQD GSDEQQKRSE IYTYEAPWHI YAMNWSVRRD KKYRLAITSL LEQYPNRVEI VQLDESNGEI RSDPNLSFEH PYPPTKTIFI PDKECQRPDL
101: LATSSDFLRL WRIADDHSRV ELKSCLNSNK NSEFCGPLTS FDWNEAEPRR IGTSSTDTTC TIWDIEREAV DTQLIAHDKE VFDIAWGGVG VFASVSADGS
201: VRVFDLRDKE HSTIIYESSE PDTPLVRLGW NKQDPRYMAT IIMDSAKVVV LDIRFPALPV VELQRHQASV NAIAWAPHSS CHICTAGDDS QALIWDISSM
301: GQHVEGGLDP ILAYTAGAEI EQLQWSSSQP DWVAIAFSTK LQILRV

Arabidopsis Description

LWD1WD repeat-containing protein LWD1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPV9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.