CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70647	Canola	cytosol	97.73	97.73
VIT_03s0017g02150.t01	Wine grape	cytosol	37.88	51.55
CDY19411	Canola	extracellular, plastid	18.94	27.78
CDY05440	Canola	cytosol	21.97	24.17
GSMUA_Achr10P...	Banana	cytosol	50.0	22.84
CDX80449	Canola	cytosol	36.36	20.17
CDY16039	Canola	cytosol	52.27	19.94
CDY26600	Canola	cytosol	52.27	19.94
GSMUA_Achr6P11830_001	Banana	cytosol	50.0	19.3
CDY05439	Canola	cytosol	11.36	14.71
TraesCS6A01G193300.1	Wheat	cytosol	46.21	14.7
Os02t0524600-01	Rice	cytoskeleton, cytosol, nucleus	45.45	14.6
TraesCS6B01G221400.3	Wheat	cytoskeleton, cytosol, nucleus	44.7	14.29
HORVU6Hr1G044360.6	Barley	cytosol, nucleus, plastid	45.45	14.22
Zm00001d016653_P001	Maize	cytoskeleton, cytosol, nucleus	44.7	14.18
OQU85036	Sorghum	cytoskeleton, cytosol, nucleus	44.7	14.18
EES06890	Sorghum	cytoskeleton, cytosol, nucleus	44.7	14.18
CDX98027	Canola	extracellular	3.79	7.46
CDY70646	Canola	nucleus	5.3	6.67
CDY65574	Canola	nucleus	5.3	6.67
CDY39498	Canola	cytosol	0.76	0.85

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A078JGD8	EnsemblPlants:CDY65575	ProteinID:CDY65575	ProteinID:CDY65575.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00046828001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19919	PANTHER:PTHR19919:SF9
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EE6D47	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:	:

Description

BnaCnng47800DBnaCnng47800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JGD8]

Coordinates

chrLK034838:+:22853..23251

Molecular Weight (calculated)

14710.5 Da

IEP (calculated)

6.505

GRAVY (calculated)

-0.245

Length

132 amino acids

Sequence
(BLAST)

001: MATIIMDSAK VVVLDIRFPA LPVVELQRHQ ASVNAIAWAP HSSLHICTAG DDSQALIWDI SLMGQKNLPS PAQPPSESVE HAARAFCEHR YDKPEKKSVP
101: LSHDRSHTEP WYLHGFSENE GSAYTMKQLI LL

Best Arabidopsis Sequence Match ( AT1G12910.1 )
(BLAST)

001: MGTSSDPIQD GSDEQQKRSE IYTYEAPWHI YAMNWSVRRD KKYRLAITSL LEQYPNRVEI VQLDESNGEI RSDPNLSFEH PYPPTKTIFI PDKECQRPDL
101: LATSSDFLRL WRIADDHSRV ELKSCLNSNK NSEFCGPLTS FDWNEAEPRR IGTSSTDTTC TIWDIEREAV DTQLIAHDKE VFDIAWGGVG VFASVSADGS
201: VRVFDLRDKE HSTIIYESSE PDTPLVRLGW NKQDPRYMAT IIMDSAKVVV LDIRFPALPV VELQRHQASV NAIAWAPHSS CHICTAGDDS QALIWDISSM
301: GQHVEGGLDP ILAYTAGAEI EQLQWSSSQP DWVAIAFSTK LQILRV

Arabidopsis Description

LWD1WD repeat-containing protein LWD1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPV9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.