CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70646	Canola	nucleus	50.0	56.19
CDY65574	Canola	nucleus	48.31	54.29
CDY26600	Canola	cytosol	81.36	27.75
CDY16039	Canola	cytosol	80.51	27.46
AT1G12910.1	Thale cress	cytosol	79.66	27.17
AT3G26640.1	Thale cress	cytosol	73.73	25.14
Bra026947.1-P	Field mustard	cytosol	80.51	24.87
PGSC0003DMT400025654	Potato	cytosol	67.8	23.05
VIT_14s0068g00660.t01	Wine grape	cytosol	66.95	22.97
KRH06773	Soybean	nucleus	66.1	22.67
KRG94752	Soybean	cytosol	66.1	22.67
Solyc04g082470.1.1	Tomato	nucleus	65.25	22.19
GSMUA_Achr10P...	Banana	cytosol	50.85	20.76
GSMUA_Achr6P11830_001	Banana	cytosol	54.24	18.71
Zm00001d016653_P001	Maize	cytoskeleton, cytosol, nucleus	55.08	15.62
EES06890	Sorghum	cytoskeleton, cytosol, nucleus	54.24	15.38
OQU85036	Sorghum	cytoskeleton, cytosol, nucleus	54.24	15.38
Os02t0524600-01	Rice	cytoskeleton, cytosol, nucleus	52.54	15.09
TraesCS6B01G221400.3	Wheat	cytoskeleton, cytosol, nucleus	51.69	14.77
TraesCS6A01G193300.1	Wheat	cytosol	51.69	14.7
HORVU6Hr1G044360.6	Barley	cytosol, nucleus, plastid	33.9	9.48
CDY05440	Canola	cytosol	2.54	2.5
CDX80449	Canola	cytosol	4.24	2.1
CDY70647	Canola	cytosol	0.85	0.76
CDY65575	Canola	cytosol	0.85	0.76
CDY19411	Canola	extracellular, plastid	0.0	0.0
CDY05439	Canola	cytosol	0.0	0.0
CDX98027	Canola	extracellular	0.0	0.0

Protein Annotations

EnsemblPlants:CDY39498	EnsemblPlantsGene:GSBRNA2T00068007001	PANTHER:PTHR19919	PANTHER:PTHR19919:SF9	ProteinID:CDY39498	ProteinID:CDY39498.1
UniParc:UPI0004EE6FC5	UniProt:A0A078HRV8	MapMan:35.1	:	:	:

Description

BnaA01g24900DBnaA01g24900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HRV8]

Coordinates

chrLK032449:+:193376..193967

Molecular Weight (calculated)

13637.0 Da

IEP (calculated)

5.122

GRAVY (calculated)

-0.509

Length

118 amino acids

Sequence
(BLAST)

001: MGTSSDPIQD VYAMNWSVRC DKKYHLAITS LLEQYPNRVE IVQLDESNGE IRSDPNLAFE HPYPHTKTIF IPDKECQRPD LLATSSDFLH LWRIADDHSR
101: IELKSCLNST FSVWNVQG

Best Arabidopsis Sequence Match ( AT1G12910.1 )
(BLAST)

001: MGTSSDPIQD GSDEQQKRSE IYTYEAPWHI YAMNWSVRRD KKYRLAITSL LEQYPNRVEI VQLDESNGEI RSDPNLSFEH PYPPTKTIFI PDKECQRPDL
101: LATSSDFLRL WRIADDHSRV ELKSCLNSNK NSEFCGPLTS FDWNEAEPRR IGTSSTDTTC TIWDIEREAV DTQLIAHDKE VFDIAWGGVG VFASVSADGS
201: VRVFDLRDKE HSTIIYESSE PDTPLVRLGW NKQDPRYMAT IIMDSAKVVV LDIRFPALPV VELQRHQASV NAIAWAPHSS CHICTAGDDS QALIWDISSM
301: GQHVEGGLDP ILAYTAGAEI EQLQWSSSQP DWVAIAFSTK LQILRV

Arabidopsis Description

LWD1WD repeat-containing protein LWD1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPV9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.