Factsheet for TraesCS6D01G110400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G087400.1	Wheat	nucleus	91.67	84.21
TraesCS6B01G148800.1	Wheat	nucleus	91.67	84.21
TraesCS6B01G148700.1	Wheat	nucleus	90.62	83.25
TraesCS6A01G120300.1	Wheat	nucleus	85.94	81.28
TraesCS6D01G110600.1	Wheat	nucleus	75.52	64.44
GSMUA_Achr7P15910_001	Banana	nucleus	36.46	45.45
GSMUA_Achr10P...	Banana	nucleus	39.06	41.21
Os02t0149900-00	Rice	nucleus	51.04	39.52
TraesCS7D01G417700.1	Wheat	nucleus	44.79	38.74
EES04526	Sorghum	nucleus	51.56	38.22
Zm00001d000303_P001	Maize	nucleus	53.12	37.92
PGSC0003DMT400096970	Potato	nucleus	36.46	35.35
GSMUA_Achr7P05000_001	Banana	nucleus	33.33	34.41
Solyc07g054380.1.1	Tomato	nucleus	36.98	34.3
GSMUA_Achr2P04490_001	Banana	nucleus	39.58	33.33
KRH19131	Soybean	nucleus	36.98	33.33
TraesCS2D01G412900.1	Wheat	nucleus	39.58	33.04
TraesCS3D01G009700.1	Wheat	nucleus	38.54	32.74
KRH12370	Soybean	nucleus	38.54	32.74
KRH02731	Soybean	nucleus	34.38	31.58
KRH37372	Soybean	nucleus	38.54	31.22
GSMUA_Achr1P10390_001	Banana	nucleus	36.98	30.6
TraesCS3D01G221800.1	Wheat	nucleus	33.33	28.83
TraesCS7D01G079000.1	Wheat	nucleus	40.1	28.62
TraesCS7D01G078900.1	Wheat	nucleus	40.62	27.86
TraesCS4D01G236600.1	Wheat	nucleus	39.58	27.74
TraesCS1D01G220900.1	Wheat	nucleus	43.23	25.46
TraesCS7D01G078800.1	Wheat	nucleus	38.54	24.92
TraesCS5D01G235300.1	Wheat	nucleus	42.19	23.89
TraesCS1D01G379700.1	Wheat	nucleus	37.5	23.68

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	PFAM:PF00046	PRINTS:PR00031	ScanProsite:PS00027
PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF219	SMART:SM00340	SMART:SM00389	SUPFAM:SSF46689
EnsemblPlantsGene:TraesCS6D01G110400	EnsemblPlants:TraesCS6D01G110400.1	TIGR:cd00086	SEG:seg	:	:

Description

No Description!

Coordinates

chr6D:+:76042794..76043516

Molecular Weight (calculated)

20889.8 Da

IEP (calculated)

10.465

GRAVY (calculated)

-0.621

Length

192 amino acids

Sequence
(BLAST)

001: MSSLTTISST SKESLEAEEL VDTRLSLVIG AGSQPPPAPV AAGHVTRQHA KRARAVHGGS DVDDGDDGGD AAGRARKKLR LTAEQAALLE KSFRSHNVLS
101: HGEKQDLAGQ LGLKPRQVEV WFQNRRARTK LKQTELDCEL LRRWCERLSD DNARLRRELA ETHAVLLVGG AQGSRLTRCP SCNRLAGGRR AA

Best Arabidopsis Sequence Match ( AT3G60390.1 )
(BLAST)

001: MSERDDGLGL SLSLSLGFNQ KDPSSRLNPM PLASYASSSH MQHMQQSNYN HPQKIQNTWI NMFQSSERNS DMRSFLRGID VNRAPSTVVV DVEDEGAGVS
101: SPNSTVSSVM SGKKSERELM AAAGAVGGGR VEDNEIERAS CSLGGGSDDE DGSGNGDDSS RKKLRLSKEQ ALVLEETFKE HSTLNPKQKM ALAKQLNLRT
201: RQVEVWFQNR RARTKLKQTE VDCEYLKRCC ENLTDENRRL QKEVSELRAL KLSPHLYMHM KPPTTLTMCP SCERVAVTSS SSSVAPPVMN SSSPMGPMSP
301: WAAMPLRQRP AAGSH

Arabidopsis Description

HAT3Homeobox-leucine zipper protein HAT3 [Source:UniProtKB/Swiss-Prot;Acc:P46602]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.