CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d000303_P001	Maize	nucleus	72.59	69.89
TraesCS6D01G110400.1	Wheat	nucleus	38.22	51.56
Os02t0149900-00	Rice	nucleus	49.03	51.21
TraesCSU01G087400.1	Wheat	nucleus	39.77	49.28
TraesCS6B01G148800.1	Wheat	nucleus	39.77	49.28
TraesCS6B01G148700.1	Wheat	nucleus	39.0	48.33
TraesCS6B01G149000.1	Wheat	nucleus	39.77	46.82
TraesCS6A01G120300.1	Wheat	nucleus	36.68	46.8
TraesCS6D01G110600.1	Wheat	nucleus	40.54	46.67
GSMUA_Achr7P15910_001	Banana	nucleus	27.41	46.1
TraesCS6A01G120600.1	Wheat	nucleus	40.15	46.02
EER90307	Sorghum	nucleus	38.22	41.95
HORVU6Hr1G021870.1	Barley	nucleus, plastid	38.61	40.65
GSMUA_Achr10P...	Banana	nucleus	27.8	39.56
PGSC0003DMT400096970	Potato	nucleus	28.19	36.87
Solyc07g054380.1.1	Tomato	nucleus	28.57	35.75
KRH12370	Soybean	nucleus	28.19	32.3
KRH19131	Soybean	nucleus	25.87	31.46
GSMUA_Achr7P05000_001	Banana	nucleus	22.39	31.18
GSMUA_Achr2P04490_001	Banana	nucleus	27.41	31.14
KRH37372	Soybean	nucleus	28.19	30.8
EES12613	Sorghum	nucleus	27.41	30.47
KRH02731	Soybean	nucleus	24.32	30.14
GSMUA_Achr1P10390_001	Banana	nucleus	26.25	29.31
EER91838	Sorghum	nucleus	28.57	29.13
EER92607	Sorghum	nucleus	28.96	25.08
EES03343	Sorghum	nucleus	22.01	24.78
EER87812	Sorghum	nucleus	27.03	24.56
EER87813	Sorghum	plastid	29.73	24.21
EER94486	Sorghum	nucleus	29.34	21.97
EER98990	Sorghum	nucleus	30.5	21.41
OQU85171	Sorghum	nucleus	26.25	21.05
KXG25294	Sorghum	nucleus	30.5	20.68

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EntrezGene:8074637	UniProt:C5XUP4	ncoils:Coil	EnsemblPlants:EES04526
ProteinID:EES04526	ProteinID:EES04526.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo
PFAM:PF00046	PFAM:PF02183	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326
PANTHER:PTHR24326:SF219	SMART:SM00340	SMART:SM00389	EnsemblPlantsGene:SORBI_3004G041600	SUPFAM:SSF46689	UniParc:UPI0001A854D9
RefSeq:XP_002451550.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:3418030..3419487

Molecular Weight (calculated)

27266.9 Da

IEP (calculated)

9.668

GRAVY (calculated)

-0.634

Length

259 amino acids

Sequence
(BLAST)

001: MSSLTTAGSS MEEQYYSVSV SVSMSPEEVG THLSLGIGSG GGGGEARSLR LAPPPPTRTV QLFGEVLSVQ DDDRDGDEAQ ALHHHQRGRP TAASRKKKRD
101: AAAAGGGTAA AADSHQSKKA KSTCGDDGGG GRKKLRLTAA QATMLEDSFR AHNILSHGEK QELSRRVGLS ARQVEVWFQN RRARTKLKQT EVDCDLLRRW
201: CDRLTDDNAR LRRDLADLRR AAASTSLGAG AAVCASCGGG TDDKRQPAGA AAAGGNMLA

Best Arabidopsis Sequence Match ( AT4G16780.1 )
(BLAST)

001: MMFEKDDLGL SLGLNFPKKQ INLKSNPSVS VTPSSSSFGL FRRSSWNESF TSSVPNSDSS QKETRTFIRG IDVNRPPSTA EYGDEDAGVS SPNSTVSSST
101: GKRSEREEDT DPQGSRGISD DEDGDNSRKK LRLSKDQSAI LEETFKDHST LNPKQKQALA KQLGLRARQV EVWFQNRRAR TKLKQTEVDC EFLRRCCENL
201: TEENRRLQKE VTELRALKLS PQFYMHMSPP TTLTMCPSCE HVSVPPPQPQ AATSAHHRSL PVNAWAPATR ISHGLTFDAL RPRS

Arabidopsis Description

HAT4Homeobox-leucine zipper protein HAT4 [Source:UniProtKB/Swiss-Prot;Acc:Q05466]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.