CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d030191_P001	Maize	nucleus	84.65	82.06
HORVU3Hr1G000250.1	Barley	nucleus	57.48	69.52
TraesCS3B01G000100.1	Wheat	nucleus	61.02	67.98
TraesCS3D01G009700.1	Wheat	nucleus	59.84	67.26
EES12613	Sorghum	nucleus	43.31	47.21
EER92607	Sorghum	nucleus	53.15	45.15
EES03343	Sorghum	nucleus	38.58	42.61
EER90307	Sorghum	nucleus	34.65	37.29
EER87813	Sorghum	plastid	45.28	36.16
EER87812	Sorghum	nucleus	40.16	35.79
EER98990	Sorghum	nucleus	46.46	31.98
EER94486	Sorghum	nucleus	43.31	31.79
KXG25294	Sorghum	nucleus	47.24	31.41
OQU85171	Sorghum	nucleus	38.98	30.65
EES04526	Sorghum	nucleus	29.13	28.57

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.1	EntrezGene:8055099	UniProt:C5WQI4	ncoils:Coil	EnsemblPlants:EER91838
ProteinID:EER91838	ProteinID:EER91838.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	PFAM:PF00046
PFAM:PF02183	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF305	SMART:SM00340
SMART:SM00389	EnsemblPlantsGene:SORBI_3001G278800	SUPFAM:SSF46689	UniParc:UPI0001A82338	RefSeq:XP_002464840.1	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:54391971..54393894

Molecular Weight (calculated)

27771.1 Da

IEP (calculated)

8.234

GRAVY (calculated)

-0.511

Length

254 amino acids

Sequence
(BLAST)

001: MEQEEVGLAL GLSLGSGHHQ QLKEQPPPSS HPCALLEPTL SLSSLPAKDG LTTTPMRRIA AVKRELQVEE DDEATDRALI YSVASSAVVT ADDDEGCNSR
101: KKLRLSKEQS ALLEDHFKEH STLNPKQKAA LARQLNLRPR QVEVWFQNRR ARTKLKQTEV DCELLKRCCE TLTEENRRLH RELQQLRALS HPHPAAAFFM
201: PAAAALSICP SCERIATGAS AAATTTGADR PNKAGGGPVR APHLFSPFTK SAAC

Best Arabidopsis Sequence Match ( AT4G37790.1 )
(BLAST)

001: MGLDDSCNTG LVLGLGLSPT PNNYNHAIKK SSSTVDHRFI RLDPSLTLSL SGESYKIKTG AGAGDQICRQ TSSHSGISSF SSGRVKRERE ISGGDGEEEA
101: EETTERVVCS RVSDDHDDEE GVSARKKLRL TKQQSALLED NFKLHSTLNP KQKQALARQL NLRPRQVEVW FQNRRARTKL KQTEVDCEFL KKCCETLTDE
201: NRRLQKELQD LKALKLSQPF YMHMPAATLT MCPSCERLGG GGVGGDTTAV DEETAKGAFS IVTKPRFYNP FTNPSAAC

Arabidopsis Description

HAT22Homeobox-leucine zipper protein HAT22 [Source:UniProtKB/Swiss-Prot;Acc:P46604]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.