Factsheet for PGSC0003DMT400078241

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 2
nucleus 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400029374
PGSC0003DMT400035458

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58530.1	PGSC0003DMT400029374	AT1G30860.1	21798944
AT5G58530.1	PGSC0003DMT400035458	AT1G30860.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078242	Potato	cytosol, plastid	80.0	75.59
VIT_06s0004g07040.t01	Wine grape	cytosol, mitochondrion	60.83	59.35
KRH30192	Soybean	plastid	52.5	54.55
Bra002640.1-P	Field mustard	cytosol	26.67	54.24
Solyc06g082170.2.1	Tomato	cytosol, plastid	93.75	54.22
KRG98239	Soybean	plastid	50.42	51.27
CDY59509	Canola	cytosol, plastid	50.83	48.41
CDY32696	Canola	cytosol, plastid	49.58	47.41
Bra020363.1-P	Field mustard	cytosol, plastid	49.58	47.22
CDY32794	Canola	peroxisome	50.42	46.72
GSMUA_Achr6P23380_001	Banana	mitochondrion	45.42	46.38
Zm00001d012471_P001	Maize	cytosol, plastid	22.08	46.09
GSMUA_Achr6P32840_001	Banana	cytosol	44.58	45.92
AT5G58530.1	Thale cress	cytosol, plastid	51.25	45.05
GSMUA_Achr5P29410_001	Banana	mitochondrion	42.92	44.59
KRH72724	Soybean	plastid	51.67	44.13
VIT_13s0067g01650.t01	Wine grape	plastid	53.33	43.54
GSMUA_Achr4P18760_001	Banana	plastid	42.08	42.8
KRH17081	Soybean	plastid	52.08	41.39
GSMUA_Achr7P18270_001	Banana	mitochondrion	44.58	41.15
GSMUA_Achr5P14280_001	Banana	plastid	39.17	41.05
HORVU3Hr1G087930.1	Barley	plastid	41.67	40.32
TraesCS3B01G381400.1	Wheat	mitochondrion, plastid	41.67	40.16
TraesCS3A01G349200.1	Wheat	plastid	41.25	39.92
TraesCS3D01G343100.1	Wheat	plastid	41.25	39.44
Os01t0829400-01	Rice	mitochondrion	41.25	38.82
EES18035	Sorghum	mitochondrion	38.33	38.33
Zm00001d010594_P001	Maize	plastid	39.58	38.15
KXG33640	Sorghum	mitochondrion	41.67	37.74
TraesCS1A01G222600.1	Wheat	mitochondrion	36.25	37.66
HORVU1Hr1G060210.1	Barley	mitochondrion, plastid	37.5	37.34
Zm00001d038018_P001	Maize	mitochondrion	36.67	36.82
EES19677	Sorghum	plastid	40.42	36.74
TraesCS1D01G224200.1	Wheat	mitochondrion	35.0	36.36
TraesCS1B01G235900.1	Wheat	mitochondrion	35.0	36.36
Os05t0471350-00	Rice	mitochondrion, plastid	37.92	35.41
Zm00001d010509_P001	Maize	mitochondrion	36.25	35.22
PGSC0003DMT400047487	Potato	cytosol	38.33	34.85
Zm00001d043006_P001	Maize	plastid	41.67	34.6
HORVU1Hr1G070570.1	Barley	plastid	36.67	33.72
Os10t0343900-01	Rice	cytosol	18.33	33.33
TraesCS1B01G305600.1	Wheat	mitochondrion, plastid	34.17	32.67
TraesCS1D01G294800.1	Wheat	plastid	33.75	32.27
Zm00001d038445_P001	Maize	cytosol	37.08	32.13
TraesCS1A01G296500.1	Wheat	mitochondrion	33.75	32.02
PGSC0003DMT400015465	Potato	cytosol	36.25	31.75
OQU81447	Sorghum	plastid	24.17	30.69
PGSC0003DMT400054970	Potato	cytosol, mitochondrion	28.75	28.28
HORVU7Hr1G076170.1	Barley	plastid	25.83	27.93
Os05t0353600-00	Rice	plastid	37.08	26.57
PGSC0003DMT400017853	Potato	cytosol	33.33	24.77
PGSC0003DMT400007648	Potato	cytosol	39.17	23.74
PGSC0003DMT400031889	Potato	plastid	30.42	23.32
PGSC0003DMT400056766	Potato	cytosol	36.67	22.17
PGSC0003DMT400020985	Potato	cytosol, plastid	39.17	21.66
PGSC0003DMT400003335	Potato	cytosol	35.83	20.53
PGSC0003DMT400005022	Potato	cytosol	30.42	19.89
PGSC0003DMT400031969	Potato	cytosol	30.0	18.41
PGSC0003DMT400023120	Potato	cytosol	29.17	17.5

Protein Annotations

EntrezGene:102594674	Gene3D:3.40.30.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987
GO:GO:0015035	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:Glutaredoxin
InterPro:IPR002109	UniProt:M1CZQ0	PFAM:PF00462	EnsemblPlantsGene:PGSC0003DMG400030448	PGSC:PGSC0003DMG400030448	EnsemblPlants:PGSC0003DMT400078241
PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF182	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI000294D9FA
RefSeq:XP_006350854.1	SEG:seg	:	:	:	:

Description

Glutaredoxin family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400030448]

Coordinates

chr6:-:57366810..57369811

Molecular Weight (calculated)

26644.0 Da

IEP (calculated)

8.610

GRAVY (calculated)

-0.178

Length

240 amino acids

Sequence
(BLAST)

001: MLLSRTKSKI WIHNNNSPNF SCSSFKDINT LFSDDSDYNS PVSTTTTKKP NIFHRVLRVN AVLRAFSTRP APAPESTTPK SIQIPAAEKK IVIYFTSLRV
101: IRSTFDDCKA VRSILSSFRV SVDERDVSMD AGFMEELKTI LGTRVKTKLS LPRVFIGGSY VGGAAEIIQL HEAGELKKYV EGLTPAEFST CEVCGGNRFV
201: LCEECSGSQK CYSEKSGFRT CTVCNENGLI RCPSCYYPIL

Best Arabidopsis Sequence Match ( AT5G58530.1 )
(BLAST)

001: MWRPWRKSSV KIHDTYSPTT ASFKDIHHLC SDDSPSFPSS PSPSPKTASR VFHRVRAANL ILKSWPTRQS NHLLRADSEP INLSRNQNPE SDSKQSKTKT
101: EPDVRISIPG AEKSIVVYFT SLRVVRPTFE ACKSVTSILH SFPVRIDERD LSMDASFSTE LQRIFGKDQN QNQNQAKTPK LPRVFIGGRY IGGAEEVKQL
201: HEIGELKKLV QELPKIEPGV CEMCGGHRFV PCKDCHGSHK VHTEKLGFRT CLTCNENGLV RCSSCSFPQS PPP

Arabidopsis Description

At5g58530 [Source:UniProtKB/TrEMBL;Acc:Q9FGG8]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.