Factsheet for PGSC0003DMT400017853

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g067400.1.1	Tomato	cytosol	68.73	78.17
CDY00113	Canola	cytosol	23.53	57.14
Bra033062.1-P	Field mustard	cytosol	49.85	47.77
CDY70277	Canola	cytosol	49.85	47.77
CDY04039	Canola	cytosol	49.54	47.48
PGSC0003DMT400056766	Potato	cytosol	58.2	47.36
PGSC0003DMT400003335	Potato	cytosol	60.99	47.02
Zm00001d026424_P001	Maize	cytosol	17.96	46.4
CDY30281	Canola	cytosol	55.42	46.37
CDY67051	Canola	cytosol	53.56	45.65
AT5G39865.1	Thale cress	cytosol, mitochondrion	54.18	44.87
Bra025638.1-P	Field mustard	cytosol	55.11	43.41
CDX85224	Canola	cytosol	53.56	41.79
AT3G28850.1	Thale cress	cytosol	54.8	41.36
CDY20015	Canola	cytosol	51.7	41.34
KRH40113	Soybean	cytosol, mitochondrion	58.51	41.27
Bra039044.1-P	Field mustard	cytosol	53.87	41.23
KRH01158	Soybean	cytosol	59.13	41.16
CDX86410	Canola	cytosol	52.32	41.12
Bra025357.1-P	Field mustard	cytosol	52.32	41.12
KRG93517	Soybean	cytosol	53.87	39.82
VIT_14s0108g00400.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	55.42	39.78
GSMUA_Achr3P01620_001	Banana	mitochondrion	39.94	36.54
Zm00001d027853_P001	Maize	plastid	36.84	36.5
EER95421	Sorghum	mitochondrion, plastid	37.15	35.71
GSMUA_Achr8P24180_001	Banana	cytosol	38.39	35.53
Os03t0170800-00	Rice	mitochondrion	34.67	34.78
TraesCS4D01G286300.1	Wheat	mitochondrion	34.67	34.36
HORVU4Hr1G075190.2	Barley	mitochondrion	34.67	34.25
TraesCS4A01G016500.1	Wheat	mitochondrion	34.98	34.24
TraesCS4B01G287700.1	Wheat	mitochondrion	34.67	34.15
GSMUA_Achr4P00540_001	Banana	mitochondrion	41.18	33.84
PGSC0003DMT400078241	Potato	cytosol, plastid	24.77	33.33
PGSC0003DMT400047487	Potato	cytosol	26.63	32.58
Os02t0748800-00	Rice	cytosol, mitochondrion	35.91	31.44
PGSC0003DMT400078242	Potato	cytosol, plastid	24.15	30.71
Zm00001d052252_P001	Maize	mitochondrion	34.98	30.71
PGSC0003DMT400015465	Potato	cytosol	26.01	30.66
EES05526	Sorghum	mitochondrion	35.6	30.26
Zm00001d018058_P001	Maize	plastid	34.98	29.97
HORVU0Hr1G017160.1	Barley	mitochondrion	34.98	29.74
TraesCS6B01G334000.1	Wheat	mitochondrion	34.98	29.58
TraesCS6D01G285000.1	Wheat	mitochondrion	34.37	29.37
TraesCS6A01G305800.1	Wheat	mitochondrion	34.98	29.35
PGSC0003DMT400054970	Potato	cytosol, mitochondrion	21.98	29.1
PGSC0003DMT400031889	Potato	plastid	27.86	28.75
PGSC0003DMT400007648	Potato	cytosol	34.98	28.54
Zm00001d002123_P001	Maize	plastid	37.15	28.3
PGSC0003DMT400020985	Potato	cytosol, plastid	36.84	27.42
GSMUA_Achr7P20960_001	Banana	mitochondrion, nucleus	33.75	26.98
Zm00001d037218_P001	Maize	plastid	35.29	26.64
Os04t0641300-01	Rice	cytosol, plastid	35.91	26.19
Zm00001d044841_P001	Maize	plastid	34.67	25.63
Os06t0226100-00	Rice	plastid	30.34	25.59
HORVU7Hr1G038000.2	Barley	cytosol, plastid	33.13	25.3
HORVU2Hr1G115200.2	Barley	cytosol	35.91	25.16
TraesCS2A01G521700.1	Wheat	plastid	35.6	25.11
TraesCS2B01G551200.1	Wheat	cytosol, plastid	35.6	25.11
Zm00001d024469_P001	Maize	cytosol, plastid	28.48	25.07
EER88108	Sorghum	plastid	35.29	25.0
TraesCS2D01G523500.1	Wheat	plastid	35.29	24.89
OQU82428	Sorghum	cytosol, plastid	37.46	24.35
TraesCS7A01G185200.1	Wheat	mitochondrion, plastid	33.75	23.96
EES14625	Sorghum	cytosol, plastid	29.41	23.46
TraesCS7B01G090200.1	Wheat	cytosol, plastid	33.75	23.34
TraesCS3A01G340600.1	Wheat	plastid	29.41	23.17
TraesCS3B01G372200.1	Wheat	plastid	29.41	23.11
TraesCS3D01G334100.1	Wheat	plastid	29.1	22.93
PGSC0003DMT400005022	Potato	cytosol	25.39	22.34
PGSC0003DMT400031969	Potato	cytosol	26.93	22.25
PGSC0003DMT400023120	Potato	cytosol	27.55	22.25
TraesCS7D01G186600.1	Wheat	plastid	33.75	21.67
Os08t0171333-00	Rice	plastid	19.5	19.94

Protein Annotations

EntrezGene:102606231	Gene3D:3.40.30.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987
GO:GO:0015035	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:Glutaredoxin
InterPro:IPR002109	UniProt:M1A9L2	PFAM:PF00462	EnsemblPlantsGene:PGSC0003DMG400006934	PGSC:PGSC0003DMG400006934	EnsemblPlants:PGSC0003DMT400017853
PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF110	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI000295B755
RefSeq:XP_006357117.1	SEG:seg	:	:	:	:

Description

Thioredoxin fold [Source:PGSC_GENE;Acc:PGSC0003DMG400006934]

Coordinates

chr2:-:25936946..25937917

Molecular Weight (calculated)

36838.3 Da

IEP (calculated)

5.071

GRAVY (calculated)

-0.462

Length

323 amino acids

Sequence
(BLAST)

001: MGCTNSKPKV CQKCNAQYYS PVHRSYSMNK RIPIDKEDCS IHLVSLTSST LGSLRLDPLK QHIKDDELMF KKDEELEMGL IQTKTWSQMI NEKIPKVIPK
101: TTITTSPGGE PQSVNVWELM EDLEDINLLA SPHRVCRFSF DVLDNPYDQL TPQLKSNCGV ADLKLVQQNK DRVILYFTSL RGVRKTYEDC CRVRMILKGL
201: GVKVDERDVS MHAGFKKELK ELLPGEGYML PRVFLGRKYI GGVDEICRMD ENGQLEKVVE SCQRVENGVC ESCGDVRFVP CETCYGSCKI YYEAEYDEED
301: ECGFQRCPDC NENGLIQCPI CCD

Best Arabidopsis Sequence Match ( AT5G39865.1 )
(BLAST)

001: MGCASSKNRN RCRNCKGGLS PVIVPRSYSM HVHHPAQHTG DSYHTVALTS STIGSLSLCD SSLRHFHKHL EDSFYKQRVS DQMGEETLIS GNGFLHGDEE
101: KMNLDLQAKV IEAKVWSSTI NEKIPKIVAK TPIVTPPGEP ETINTWELME GLEDVSPLRS PNHLRSFSFD FVRIQPSHDH DHDVAVSFDL PKSRFHENVK
201: SSCRVDDLDP PDIVSRFKRK TLGKERVVLY FTSLRGIRKT YEDCCNIRII LKSLGIRIDE RDVSMHSGFK DELKKLLEGK FNNGVGITLP RVFLGNKYLG
301: GVEEIKKLNE NGELEKLIKD CEMVEDGSPG FGNECEACGD VRFVPCETCS GSCKLYHEGE EEDEGVTEYG FQRCPYCNEN GLIRCHVCCE

Arabidopsis Description

Uncharacterized protein At5g39865 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLE8]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.