Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 3
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| EER99396 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G58530.1 | EER99396 | AT1G30860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d012471_P001 | Maize | cytosol, plastid | 34.92 | 57.39 |
| Os10t0343900-01 | Rice | cytosol | 29.1 | 41.67 |
| EES19677 | Sorghum | plastid | 57.67 | 41.29 |
| Bra002640.1-P | Field mustard | cytosol | 25.4 | 40.68 |
| TraesCS3A01G349200.1 | Wheat | plastid | 46.03 | 35.08 |
| TraesCS3B01G381400.1 | Wheat | mitochondrion, plastid | 46.03 | 34.94 |
| TraesCS3D01G343100.1 | Wheat | plastid | 46.03 | 34.66 |
| GSMUA_Achr5P29410_001 | Banana | mitochondrion | 41.8 | 34.2 |
| HORVU3Hr1G087930.1 | Barley | plastid | 44.44 | 33.87 |
| Os01t0829400-01 | Rice | mitochondrion | 45.5 | 33.73 |
| GSMUA_Achr5P14280_001 | Banana | plastid | 39.15 | 32.31 |
| KXG33640 | Sorghum | mitochondrion | 43.92 | 31.32 |
| GSMUA_Achr4P18760_001 | Banana | plastid | 37.57 | 30.08 |
| EES18035 | Sorghum | mitochondrion | 38.1 | 30.0 |
| HORVU7Hr1G076170.1 | Barley | plastid | 34.39 | 29.28 |
| GSMUA_Achr6P32840_001 | Banana | cytosol | 35.98 | 29.18 |
| GSMUA_Achr6P23380_001 | Banana | mitochondrion | 34.39 | 27.66 |
| EER94843 | Sorghum | cytosol | 29.1 | 27.09 |
| CDX74801 | Canola | cytosol | 23.81 | 26.95 |
| GSMUA_Achr7P18270_001 | Banana | mitochondrion | 35.98 | 26.15 |
| KRH14919 | Soybean | plastid | 32.8 | 25.62 |
| KRG97693 | Soybean | plastid | 30.69 | 25.33 |
| VIT_06s0004g07040.t01 | Wine grape | cytosol, mitochondrion | 32.8 | 25.2 |
| Solyc06g082180.1.1 | Tomato | cytosol, plastid | 33.86 | 25.2 |
| PGSC0003DMT400078242 | Potato | cytosol, plastid | 33.86 | 25.2 |
| KRH31178 | Soybean | plastid | 29.63 | 24.45 |
| PGSC0003DMT400078241 | Potato | cytosol, plastid | 30.69 | 24.17 |
| CDY32696 | Canola | cytosol, plastid | 31.22 | 23.51 |
| Bra020363.1-P | Field mustard | cytosol, plastid | 31.22 | 23.41 |
| CDY59509 | Canola | cytosol, plastid | 31.22 | 23.41 |
| KRH30192 | Soybean | plastid | 28.04 | 22.94 |
| KRH73271 | Soybean | plastid | 35.45 | 22.26 |
| CDY32794 | Canola | peroxisome | 30.16 | 22.01 |
| AT5G58530.1 | Thale cress | cytosol, plastid | 31.75 | 21.98 |
| KRH72724 | Soybean | plastid | 32.28 | 21.71 |
| CDY18861 | Canola | mitochondrion | 28.04 | 21.54 |
| CDX74802 | Canola | cytosol, mitochondrion | 28.04 | 21.46 |
| Bra004972.1-P | Field mustard | mitochondrion | 28.04 | 21.46 |
| KRG98239 | Soybean | plastid | 26.45 | 21.19 |
| VIT_13s0067g01650.t01 | Wine grape | plastid | 32.28 | 20.75 |
| KXG36862 | Sorghum | cytosol | 23.28 | 20.66 |
| KRH17081 | Soybean | plastid | 31.75 | 19.87 |
| Bra004971.1-P | Field mustard | plastid | 26.45 | 19.76 |
| EER95421 | Sorghum | mitochondrion, plastid | 29.1 | 16.37 |
| EER95886 | Sorghum | mitochondrion | 22.22 | 15.33 |
| EES05526 | Sorghum | mitochondrion | 27.51 | 13.68 |
| Solyc06g082170.2.1 | Tomato | cytosol, plastid | 28.57 | 13.01 |
| EER91159 | Sorghum | mitochondrion | 24.34 | 12.92 |
| EES14625 | Sorghum | cytosol, plastid | 27.51 | 12.84 |
| KXG29248 | Sorghum | cytosol | 21.69 | 12.46 |
| EER88108 | Sorghum | plastid | 29.63 | 12.28 |
| OQU82428 | Sorghum | cytosol, plastid | 28.57 | 10.87 |
| KXG31460 | Sorghum | cytosol | 22.75 | 10.75 |
| EES10743 | Sorghum | cytosol | 23.81 | 9.98 |
Protein Annotations
| EnsemblPlants:OQU81447 | EnsemblPlantsGene:SORBI_3006G060100 | Gene3D:3.40.30.10 | InterPro:Thioredoxin-like_sf | PANTHER:PTHR10168 | PANTHER:PTHR10168:SF95 |
| ProteinID:OQU81447 | ProteinID:OQU81447.1 | ProteinID:OQU81448.1 | ProteinID:OQU81449.1 | ProteinID:OQU81450.1 | ProteinID:OQU81451.1 |
| SEG:seg | SUPFAM:SSF52833 | UniParc:UPI000B8BB111 | UniProt:A0A1Z5RCY4 | MapMan:35.2 | : |
Description
hypothetical protein
Coordinates
chr6:-:41089964..41092654
Molecular Weight (calculated)
20664.1 Da
IEP (calculated)
9.579
GRAVY (calculated)
-0.406
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSFEQLKNL NTRGQLGPGL CWPFSRPNSV WVMPQSYKSV PPNPSHQSPP PTPPTLGVCC RICRPRLPSR ARRAPLVLPH PHAQQQRRHR MALPQVFVGG
101: RYLSGAEEVR RLHESGELRR IVAPALTNPA FPGNCARCGG ERYVLCSACD GSHKRYSLKG GGGFHACTEC NENGLVRCPA CCCISIPAA
101: RYLSGAEEVR RLHESGELRR IVAPALTNPA FPGNCARCGG ERYVLCSACD GSHKRYSLKG GGGFHACTEC NENGLVRCPA CCCISIPAA
001: MWRPWRKSSV KIHDTYSPTT ASFKDIHHLC SDDSPSFPSS PSPSPKTASR VFHRVRAANL ILKSWPTRQS NHLLRADSEP INLSRNQNPE SDSKQSKTKT
101: EPDVRISIPG AEKSIVVYFT SLRVVRPTFE ACKSVTSILH SFPVRIDERD LSMDASFSTE LQRIFGKDQN QNQNQAKTPK LPRVFIGGRY IGGAEEVKQL
201: HEIGELKKLV QELPKIEPGV CEMCGGHRFV PCKDCHGSHK VHTEKLGFRT CLTCNENGLV RCSSCSFPQS PPP
101: EPDVRISIPG AEKSIVVYFT SLRVVRPTFE ACKSVTSILH SFPVRIDERD LSMDASFSTE LQRIFGKDQN QNQNQAKTPK LPRVFIGGRY IGGAEEVKQL
201: HEIGELKKLV QELPKIEPGV CEMCGGHRFV PCKDCHGSHK VHTEKLGFRT CLTCNENGLV RCSSCSFPQS PPP
Arabidopsis Description
At5g58530 [Source:UniProtKB/TrEMBL;Acc:Q9FGG8]
SUBAcon: [cytosol,plastid]
SUBAcon: [cytosol,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.