Factsheet for VIT_02s0025g01710.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60067	Soybean	cytosol	52.91	59.35
PGSC0003DMT400031969	Potato	cytosol	58.2	56.27
Solyc08g082590.2.1	Tomato	cytosol	58.2	55.98
CDY47842	Canola	cytosol	46.03	48.33
CDY62024	Canola	cytosol	46.03	48.33
Bra040917.1-P	Field mustard	cytosol	45.77	48.06
VIT_08s0032g01030.t01	Wine grape	cytosol	22.49	46.45
AT1G64500.1	Thale cress	cytosol	43.65	44.84
GSMUA_Achr10P...	Banana	cytosol	43.39	44.09
Os01t0235900-00	Rice	plasma membrane	39.95	38.62
Zm00001d039270_P001	Maize	cytosol	39.95	38.04
HORVU3Hr1G057240.1	Barley	cytosol	40.48	37.5
TraesCS3D01G166500.1	Wheat	cytosol	39.95	37.47
TraesCS3B01G189800.1	Wheat	cytosol	40.21	37.44
TraesCS3A01G158800.1	Wheat	cytosol	39.68	37.04
KXG31460	Sorghum	cytosol	39.15	37.0
VIT_08s0007g05530.t01	Wine grape	cytosol	22.75	35.1
VIT_02s0025g02700.t01	Wine grape	cytosol	25.13	30.74
VIT_06s0004g07040.t01	Wine grape	cytosol, mitochondrion	19.58	30.08
VIT_13s0019g00340.t01	Wine grape	plastid	19.58	27.61
VIT_13s0067g01650.t01	Wine grape	plastid	20.63	26.53
VIT_13s0073g00520.t01	Wine grape	cytosol	26.19	26.33
VIT_08s0007g03220.t01	Wine grape	cytosol	26.72	25.38
VIT_14s0108g00400.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	25.4	21.33

Protein Annotations

EntrezGene:100247840	wikigene:100247840	MapMan:20.5.4	Gene3D:3.40.30.10	EMBL:AM445372	ProteinID:CAN65189
ProteinID:CAN65189.1	ProteinID:CCB58256	ProteinID:CCB58256.1	UniProt:F6HU33	EMBL:FN596251	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005884
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009902	GO:GO:0009987
GO:GO:0015035	GO:GO:0016043	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0051017
GO:GO:0055114	InterPro:Glutaredoxin	InterPro:IPR002109	EntrezGene:LOC100247840	wikigene:LOC100247840	PFAM:PF00462
PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF61	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI00021093D1
ArrayExpress:VIT_02s0025g01710	EnsemblPlantsGene:VIT_02s0025g01710	EnsemblPlants:VIT_02s0025g01710.t01	unigene:Vvi.7854	RefSeq:XP_002266905	RefSeq:XP_002266905.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2:+:1628584..1630021

Molecular Weight (calculated)

42136.2 Da

IEP (calculated)

6.704

GRAVY (calculated)

-0.591

Length

378 amino acids

Sequence
(BLAST)

001: MGCSSSKRIE ATVDVYRPAP ASFAVFDINT IEEPWLKVDH APEHHQEKPT HLPPLILEKL NALEEGPRSW DEVSRALEDL KPTLHSPAPA VTDADKPPQP
101: QPQPPAQDSP TLKPQATRKS LSFHTVAELD TKLSSKPTES TRTELKKTES IRINSKKPES RDAAAAKVAP AVVVSEGMRP VKDNMFILRD RLEREREGKS
201: ANFDKMMSRR DPLSEYPEKC PPGGADSLVL YTTSLGGVRR TYEDCNRLRS VLESHRVVFD ERDVSLHGEF LKELRELLGE ESSVPRLFVK GRYVGGVEEV
301: VELNEWGRLG KLLNCAKVER GVGRQGCEGC GGARFVPCLE CGGSCKVMVG ETKERCSECN ENGLVQCPAY FYYTIIKY

Best Arabidopsis Sequence Match ( AT1G64500.1 )
(BLAST)

001: MGCTSSKQAK ANVVADVYKP PPSSFAVFDV NAIQEPWLKF EHEDDEKPPR STVFDRLDED DDDDDDDGDD APKTWEEVSK SLETKLKPAA VKPPEVDSVK
101: PPATPPRRLP RKSASFHTLD ELEVRAKRSI AAQIPTTMVK LKRTESMSKL RPESDDRTES TQSSYSGPRS VKENIFVKRD RERREKEGNK KPVMNWDPLR
201: EFPEKCPPGG GEGLIVYTTS LQGVRRTYED CMRVRAIMEQ QGVVVDERDV SLDAGVLSEL KELLQDEASV APPRVFVKGR YLGGAAEVTA MNENGKLGRV
301: LRWARVERVG EEGRLTCEGC GGARWLPCFE CGGSCKVAAV GAAKGERWER CVKCNENGLI RCPVCFVN

Arabidopsis Description

F1N19.7 [Source:UniProtKB/TrEMBL;Acc:Q9SGW5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.