Factsheet for VIT_08s0007g03220.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023120	Potato	cytosol	64.07	63.75
Solyc09g009860.1.1	Tomato	cytosol	62.81	62.66
CDY14169	Canola	cytosol	35.43	57.55
GSMUA_Achr6P13210_001	Banana	cytosol	38.94	56.16
CDX80893	Canola	cytosol	15.33	55.96
Bra005786.1-P	Field mustard	cytosol	15.08	55.05
CDY11274	Canola	cytosol	15.08	55.05
CDY04902	Canola	nucleus	47.24	54.18
Bra028812.1-P	Field mustard	nucleus	47.49	54.15
AT5G03870.1	Thale cress	cytosol	50.5	52.34
KRH67928	Soybean	cytosol	59.55	51.75
GSMUA_Achr6P18300_001	Banana	cytosol	49.5	50.51
VIT_08s0032g01030.t01	Wine grape	cytosol	22.36	48.63
GSMUA_Achr9P02540_001	Banana	cytosol	47.74	48.47
CDX80894	Canola	nucleus	23.37	47.45
CDY11275	Canola	nucleus	22.61	45.45
VIT_02s0025g02700.t01	Wine grape	cytosol	32.41	41.75
TraesCS2A01G295000.1	Wheat	mitochondrion	41.96	39.39
HORVU2Hr1G073040.1	Barley	cytosol	41.46	39.29
TraesCS2D01G292800.1	Wheat	mitochondrion	41.71	39.15
TraesCS2B01G311500.1	Wheat	mitochondrion	41.46	39.1
EES10743	Sorghum	cytosol	43.47	38.36
Zm00001d003779_P001	Maize	cytosol	42.71	38.03
Os04t0412800-01	Rice	cytosol, plastid	42.46	37.72
VIT_08s0007g05530.t01	Wine grape	cytosol	20.85	33.88
VIT_13s0073g00520.t01	Wine grape	cytosol	29.9	31.65
VIT_13s0019g00340.t01	Wine grape	plastid	19.85	29.48
VIT_06s0004g07040.t01	Wine grape	cytosol, mitochondrion	17.84	28.86
VIT_02s0025g01710.t01	Wine grape	cytosol	25.38	26.72
VIT_14s0108g00400.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	29.15	25.78
VIT_13s0067g01650.t01	Wine grape	plastid	18.84	25.51

Protein Annotations

EntrezGene:100249375	wikigene:100249375	Gene3D:3.40.30.10	MapMan:35.1	ProteinID:CCB55439	ProteinID:CCB55439.1
UniProt:F6HKL7	EMBL:FN595991	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035
GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:Glutaredoxin	InterPro:IPR002109
EntrezGene:LOC100249375	wikigene:LOC100249375	PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF79
SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI0001983D8F	ArrayExpress:VIT_08s0007g03220	EnsemblPlantsGene:VIT_08s0007g03220	EnsemblPlants:VIT_08s0007g03220.t01
RefSeq:XP_002276568	RefSeq:XP_002276568.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr8:-:17220237..17221466

Molecular Weight (calculated)

43831.2 Da

IEP (calculated)

8.440

GRAVY (calculated)

-0.407

Length

398 amino acids

Sequence
(BLAST)

001: MGCASSKLFR KDLQQEILDK NGECLNHVVS LTSSTYGALK LDNDLRNKES VAEPKRSPPR EEAEVINAWE LMEGLEDGIP IAVPVKKSPK SLGFLRGFGD
101: IDARSPLKFL NQIASPKRIK RSGGKENKQR ANGFGGGGGR SDCSPKLVLR DSTPSENIKR VVPTLRVPVK RTPVGDGKAD NFESGRGSSL RRMSLSPLFD
201: PELLASFEKE LSEEKEQIKK IVSPIPKVQK LRNSRDCESI LDLFEKKCPP GGANAVVIYT TTLRGIRKTF EDCNHVRSIL ESHHIHMFER DISMDSGLKE
301: ELRGLMGTKE VKVPLVFVKG RLIGGADEVV KLEEEGKLDI LFDGIPRALA GCQGCAGVRF VMCMACNGSC KLLDEDQKKM VKCSECNENG LIQCPICC

Best Arabidopsis Sequence Match ( AT5G03870.1 )
(BLAST)

001: MGCVSSKLGK KKLIREIRVN NGGDHIVSLT STTYGHLDLD ERAETSPKSL EVTKGEVFES EIIPRRSIKR DDPEIINTWE LMEDLEDSMH VSNPQKISPK
101: SRGIFGKSWK TPVKSVVESP KRGSSKRFGG KENNSRGVSP NQILKPKNIL ETPKRGVMRL SFPLKSEESS VTVTQRRKSY SPMFDPDLVA SYERELSQEK
201: EQIKMVISPV VHESRKTEKT ERILEKFPEK CPPGGEHSVV IYITTLRGIR KTFEDCNVVR SILDSHEVRF SERDVSMHSV FKEEIRGIMG TKHVKIPAVF
301: VKGRMVGSVE EVMRLEEEGK LGILLEGIPA ARLGGSCCRG CGGMRFMMCV VCNGSCKVRE EEKKSMVKCL KCNENGLVLC PICS

Arabidopsis Description

Emb [Source:UniProtKB/TrEMBL;Acc:Q9LZC2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.