Factsheet for Bra028812.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04902	Canola	nucleus	98.85	99.42
CDY14169	Canola	cytosol	67.91	96.73
Bra005786.1-P	Field mustard	cytosol	26.07	83.49
AT5G03870.1	Thale cress	cytosol	84.24	76.56
GSMUA_Achr6P13210_001	Banana	cytosol	38.11	48.19
VIT_08s0007g03220.t01	Wine grape	cytosol	54.15	47.49
Solyc09g009860.1.1	Tomato	cytosol	50.72	44.36
PGSC0003DMT400023120	Potato	cytosol	50.43	44.0
KRH67928	Soybean	cytosol	54.15	41.27
GSMUA_Achr9P02540_001	Banana	cytosol	45.56	40.56
GSMUA_Achr6P18300_001	Banana	cytosol	44.7	40.0
Bra002640.1-P	Field mustard	cytosol	13.18	38.98
Bra023284.1-P	Field mustard	cytosol	32.95	38.33
Bra000716.1-P	Field mustard	cytosol	33.81	38.06
Bra005898.1-P	Field mustard	cytosol, mitochondrion	25.21	35.63
TraesCS2A01G295000.1	Wheat	mitochondrion	42.69	35.14
TraesCS2B01G311500.1	Wheat	mitochondrion	42.41	35.07
HORVU2Hr1G073040.1	Barley	cytosol	42.12	35.0
Bra009197.1-P	Field mustard	cytosol	24.07	34.71
TraesCS2D01G292800.1	Wheat	mitochondrion	41.83	34.43
Os04t0412800-01	Rice	cytosol, plastid	41.83	32.59
Zm00001d003779_P001	Maize	cytosol	41.55	32.44
EES10743	Sorghum	cytosol	41.55	32.15
Bra020363.1-P	Field mustard	cytosol, plastid	22.06	30.56
Bra008801.1-P	Field mustard	plastid	23.21	30.34
Bra004972.1-P	Field mustard	mitochondrion	20.63	29.15
Bra006216.1-P	Field mustard	plastid	21.49	28.41
Bra016941.1-P	Field mustard	plastid	29.8	28.26
Bra028902.1-P	Field mustard	mitochondrion	28.65	27.93
Bra040917.1-P	Field mustard	cytosol	28.37	27.5
Bra004971.1-P	Field mustard	plastid	19.48	26.88
Bra033062.1-P	Field mustard	cytosol	25.5	26.41
Bra007299.1-P	Field mustard	plastid	29.8	26.33
Bra025357.1-P	Field mustard	cytosol	30.95	26.28
Bra025638.1-P	Field mustard	cytosol	30.37	25.85
Bra014646.1-P	Field mustard	plastid	28.08	24.94
Bra000225.1-P	Field mustard	plastid	27.79	24.19
Bra039044.1-P	Field mustard	cytosol	28.65	23.7

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.1	EnsemblPlantsGene:Bra028812	EnsemblPlants:Bra028812.1	EnsemblPlants:Bra028812.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009055	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454
GO:GO:0055114	InterPro:Glutaredoxin	InterPro:IPR002109	UniProt:M4EJ47	PFAM:PF00462	PFscan:PS51354
PANTHER:PTHR10168	PANTHER:PTHR10168:SF79	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI0002543037	SEG:seg

Description

AT5G03870 (E=5e-142) | glutaredoxin family protein

Coordinates

chrA02:-:1938636..1939685

Molecular Weight (calculated)

39172.3 Da

IEP (calculated)

8.686

GRAVY (calculated)

-0.611

Length

349 amino acids

Sequence
(BLAST)

001: MGCVSSKPVK KKLVREIRVN NGGDHIVSLT STTYGHLDVQ QRAETSPKGD DFESERRSNA QREDPEIINT WELMEDLEDS TKVSPKSRGI FGKSWKTPVK
101: SIVESPKRNG SSKRFRGKEN RGEKQSPNQK NILETPKRGV MRLSFPLKSE EITQRRRKSF SPMFDPDLVA SYERELSQEK EQIKMVISPP DPLPEKCPPG
201: GENSVVVYIT TLRGIRKTFE DCNAVRSILD SHEVRYSERD VSMHSVFKEE IRGIMGTKQV KIPAVFVKGR MIGSVEEVVR LEEEGKLGIL LECMPKARVS
301: GCCCGCGGMR FVMCGVCNGS CKVRDAEKKD TVKCLECNEN GLVVCPMCS

Best Arabidopsis Sequence Match ( AT5G03870.1 )
(BLAST)

001: MGCVSSKLGK KKLIREIRVN NGGDHIVSLT STTYGHLDLD ERAETSPKSL EVTKGEVFES EIIPRRSIKR DDPEIINTWE LMEDLEDSMH VSNPQKISPK
101: SRGIFGKSWK TPVKSVVESP KRGSSKRFGG KENNSRGVSP NQILKPKNIL ETPKRGVMRL SFPLKSEESS VTVTQRRKSY SPMFDPDLVA SYERELSQEK
201: EQIKMVISPV VHESRKTEKT ERILEKFPEK CPPGGEHSVV IYITTLRGIR KTFEDCNVVR SILDSHEVRF SERDVSMHSV FKEEIRGIMG TKHVKIPAVF
301: VKGRMVGSVE EVMRLEEEGK LGILLEGIPA ARLGGSCCRG CGGMRFMMCV VCNGSCKVRE EEKKSMVKCL KCNENGLVLC PICS

Arabidopsis Description

Emb [Source:UniProtKB/TrEMBL;Acc:Q9LZC2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.