Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY14169 | Canola | cytosol | 54.43 | 85.31 |
| CDY04902 | Canola | nucleus | 76.3 | 84.44 |
| Bra028812.1-P | Field mustard | nucleus | 76.56 | 84.24 |
| CDY11274 | Canola | cytosol | 23.44 | 82.57 |
| Bra005786.1-P | Field mustard | cytosol | 22.92 | 80.73 |
| CDX80893 | Canola | cytosol | 22.66 | 79.82 |
| CDX80894 | Canola | nucleus | 40.62 | 79.59 |
| CDY11275 | Canola | nucleus | 39.84 | 77.27 |
| VIT_08s0007g03220.t01 | Wine grape | cytosol | 52.34 | 50.5 |
| GSMUA_Achr6P13210_001 | Banana | cytosol | 35.16 | 48.91 |
| Solyc09g009860.1.1 | Tomato | cytosol | 50.0 | 48.12 |
| PGSC0003DMT400023120 | Potato | cytosol | 49.22 | 47.25 |
| KRH67928 | Soybean | cytosol | 51.56 | 43.23 |
| GSMUA_Achr6P18300_001 | Banana | cytosol | 42.45 | 41.79 |
| GSMUA_Achr9P02540_001 | Banana | cytosol | 42.19 | 41.33 |
| AT1G32760.1 | Thale cress | plastid | 31.25 | 38.22 |
| AT4G10630.1 | Thale cress | cytosol | 32.55 | 37.43 |
| AT5G06470.1 | Thale cress | cytosol, mitochondrion | 22.66 | 36.4 |
| HORVU2Hr1G073040.1 | Barley | cytosol | 39.32 | 35.95 |
| TraesCS2A01G295000.1 | Wheat | mitochondrion | 39.58 | 35.85 |
| TraesCS2B01G311500.1 | Wheat | mitochondrion | 39.32 | 35.78 |
| TraesCS2D01G292800.1 | Wheat | mitochondrion | 39.32 | 35.61 |
| Os04t0412800-01 | Rice | cytosol, plastid | 38.54 | 33.04 |
| Zm00001d003779_P001 | Maize | cytosol | 38.28 | 32.89 |
| EES10743 | Sorghum | cytosol | 38.54 | 32.82 |
| AT5G58530.1 | Thale cress | cytosol, plastid | 20.31 | 28.57 |
| AT5G13810.1 | Thale cress | plastid | 20.31 | 28.47 |
| AT3G11773.2 | Thale cress | cytosol | 14.58 | 28.0 |
| AT5G01420.1 | Thale cress | cytosol | 28.12 | 26.93 |
| AT5G39865.1 | Thale cress | cytosol, mitochondrion | 26.56 | 26.15 |
| AT3G57070.1 | Thale cress | plastid | 28.12 | 25.9 |
| AT1G64500.1 | Thale cress | cytosol | 24.74 | 25.82 |
| AT3G28850.1 | Thale cress | cytosol | 28.39 | 25.47 |
| AT2G41330.1 | Thale cress | plastid | 26.56 | 25.37 |
Protein Annotations
| Gene3D:3.40.30.10 | MapMan:35.1 | EntrezGene:831685 | ProteinID:AED90665.1 | ArrayExpress:AT5G03870 | EnsemblPlantsGene:AT5G03870 |
| RefSeq:AT5G03870 | TAIR:AT5G03870 | RefSeq:AT5G03870-TAIR-G | EnsemblPlants:AT5G03870.1 | TAIR:AT5G03870.1 | ProteinID:BAB08613.1 |
| ProteinID:CAB85507.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0006091 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009055 | GO:GO:0009506 | GO:GO:0009987 | GO:GO:0015035 |
| GO:GO:0019725 | GO:GO:0022900 | GO:GO:0045454 | GO:GO:0055114 | InterPro:Glutaredoxin | InterPro:IPR002109 |
| RefSeq:NP_196007.1 | PFAM:PF00462 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PFscan:PS51354 | PANTHER:PTHR10168 | PANTHER:PTHR10168:SF79 | UniProt:Q9LZC2 | SUPFAM:SSF52833 |
| InterPro:Thioredoxin-like_sf | UniParc:UPI00000AA7FC | SEG:seg | : | : | : |
Description
Emb [Source:UniProtKB/TrEMBL;Acc:Q9LZC2]
Coordinates
chr5:-:1035578..1037370
Molecular Weight (calculated)
43133.5 Da
IEP (calculated)
9.201
GRAVY (calculated)
-0.485
Length
384 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCVSSKLGK KKLIREIRVN NGGDHIVSLT STTYGHLDLD ERAETSPKSL EVTKGEVFES EIIPRRSIKR DDPEIINTWE LMEDLEDSMH VSNPQKISPK
101: SRGIFGKSWK TPVKSVVESP KRGSSKRFGG KENNSRGVSP NQILKPKNIL ETPKRGVMRL SFPLKSEESS VTVTQRRKSY SPMFDPDLVA SYERELSQEK
201: EQIKMVISPV VHESRKTEKT ERILEKFPEK CPPGGEHSVV IYITTLRGIR KTFEDCNVVR SILDSHEVRF SERDVSMHSV FKEEIRGIMG TKHVKIPAVF
301: VKGRMVGSVE EVMRLEEEGK LGILLEGIPA ARLGGSCCRG CGGMRFMMCV VCNGSCKVRE EEKKSMVKCL KCNENGLVLC PICS
101: SRGIFGKSWK TPVKSVVESP KRGSSKRFGG KENNSRGVSP NQILKPKNIL ETPKRGVMRL SFPLKSEESS VTVTQRRKSY SPMFDPDLVA SYERELSQEK
201: EQIKMVISPV VHESRKTEKT ERILEKFPEK CPPGGEHSVV IYITTLRGIR KTFEDCNVVR SILDSHEVRF SERDVSMHSV FKEEIRGIMG TKHVKIPAVF
301: VKGRMVGSVE EVMRLEEEGK LGILLEGIPA ARLGGSCCRG CGGMRFMMCV VCNGSCKVRE EEKKSMVKCL KCNENGLVLC PICS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.