Subcellular Localization
min:
: max
Winner_takes_all: cytosol, mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX98926 | Canola | cytosol | 82.01 | 81.67 |
| Bra009197.1-P | Field mustard | cytosol | 82.43 | 81.41 |
| Bra005898.1-P | Field mustard | cytosol, mitochondrion | 84.1 | 81.38 |
| CDY67834 | Canola | cytosol | 82.01 | 80.99 |
| CDX81007 | Canola | cytosol, mitochondrion | 74.48 | 80.18 |
| CDY55763 | Canola | cytosol, mitochondrion | 73.22 | 78.83 |
| AT3G11773.2 | Thale cress | cytosol | 47.28 | 56.5 |
| VIT_08s0032g01030.t01 | Wine grape | cytosol | 40.59 | 53.01 |
| KRG96283 | Soybean | mitochondrion | 43.93 | 41.34 |
| KRH68025 | Soybean | cytosol | 44.35 | 40.15 |
| KRH72143 | Soybean | mitochondrion | 43.93 | 39.77 |
| KRH32876 | Soybean | cytosol | 43.93 | 38.04 |
| Zm00001d012904_P001 | Maize | cytosol | 19.25 | 37.1 |
| Zm00001d007885_P001 | Maize | mitochondrion | 31.38 | 33.48 |
| Os07t0159900-01 | Rice | mitochondrion | 35.56 | 33.2 |
| GSMUA_Achr6P03120_001 | Banana | cytosol, mitochondrion | 40.17 | 32.11 |
| HORVU2Hr1G059940.1 | Barley | mitochondrion | 35.15 | 31.11 |
| TraesCS2A01G249000.1 | Wheat | mitochondrion | 34.31 | 30.37 |
| TraesCS2B01G263800.1 | Wheat | mitochondrion | 33.89 | 30.0 |
| TraesCS2D01G250600.1 | Wheat | mitochondrion | 33.89 | 30.0 |
| EER95886 | Sorghum | mitochondrion | 33.89 | 29.56 |
| Zm00001d018827_P001 | Maize | mitochondrion | 31.8 | 28.25 |
| AT5G58530.1 | Thale cress | cytosol, plastid | 31.8 | 27.84 |
| AT1G32760.1 | Thale cress | plastid | 35.15 | 26.75 |
| AT4G10630.1 | Thale cress | cytosol | 36.82 | 26.35 |
| Os03t0648800-00 | Rice | mitochondrion | 35.56 | 26.23 |
| TraesCS5B01G374300.1 | Wheat | mitochondrion | 33.05 | 25.08 |
| TraesCS5D01G381700.1 | Wheat | mitochondrion | 33.05 | 24.53 |
| Zm00001d013668_P001 | Maize | mitochondrion | 35.56 | 24.29 |
| TraesCS5A01G372200.1 | Wheat | mitochondrion | 33.05 | 24.01 |
| EER91159 | Sorghum | mitochondrion | 35.56 | 23.88 |
| AT5G13810.1 | Thale cress | plastid | 27.2 | 23.72 |
| Zm00001d033205_P001 | Maize | mitochondrion | 34.31 | 23.7 |
| AT5G01420.1 | Thale cress | cytosol | 38.49 | 22.94 |
| AT5G03870.1 | Thale cress | cytosol | 36.4 | 22.66 |
| AT1G64500.1 | Thale cress | cytosol | 34.31 | 22.28 |
| HORVU5Hr1G092580.1 | Barley | cytosol | 22.18 | 21.9 |
| AT2G41330.1 | Thale cress | plastid | 30.54 | 18.16 |
| AT3G57070.1 | Thale cress | plastid | 31.38 | 17.99 |
| AT5G39865.1 | Thale cress | cytosol, mitochondrion | 27.62 | 16.92 |
| AT3G28850.1 | Thale cress | cytosol | 29.71 | 16.59 |
Protein Annotations
| Gene3D:3.40.30.10 | MapMan:35.1 | EntrezGene:830535 | UniProt:A0A178UP76 | ProteinID:AED91021.1 | ArrayExpress:AT5G06470 |
| EnsemblPlantsGene:AT5G06470 | RefSeq:AT5G06470 | TAIR:AT5G06470 | RefSeq:AT5G06470-TAIR-G | EnsemblPlants:AT5G06470.1 | TAIR:AT5G06470.1 |
| Unigene:At.65020 | ProteinID:BAB08969.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005623 |
| GO:GO:0006091 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009055 | GO:GO:0009987 | GO:GO:0015035 |
| GO:GO:0019725 | GO:GO:0022900 | GO:GO:0045454 | GO:GO:0055114 | InterPro:Glutaredoxin | InterPro:IPR002109 |
| RefSeq:NP_196265.1 | ProteinID:OAO94904.1 | PFAM:PF00462 | PFscan:PS51354 | PANTHER:PTHR10168 | PANTHER:PTHR10168:SF74 |
| UniProt:Q9FNG2 | SUPFAM:SSF52833 | InterPro:Thioredoxin-like_sf | UniParc:UPI00000A659B | SEG:seg | : |
Description
Emb [Source:UniProtKB/TrEMBL;Acc:Q9FNG2]
Coordinates
chr5:-:1974535..1975530
Molecular Weight (calculated)
27365.8 Da
IEP (calculated)
6.614
GRAVY (calculated)
-0.557
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGMKERLVK KIKLITTVKT LKQSLTLHKS TIDRTIHHLR DEIVAESGQS KGCVTPTLLE LEDAEEHNLE EERGILLEFK ENCPPGGEDS VVFYTTGLRS
101: VRKTFEACRR VRFLLENHQV MYRERDVSMD SEFREEMWRL LGGKVTSPRL FIRGRYIGGA EEVVALNENG KLKKLLQGIS QVDSPCESCE NERFLICSSC
201: NGSTRLLAEH HDEESSNDNM WTRCRECNEN GLVKCPLCT
101: VRKTFEACRR VRFLLENHQV MYRERDVSMD SEFREEMWRL LGGKVTSPRL FIRGRYIGGA EEVVALNENG KLKKLLQGIS QVDSPCESCE NERFLICSSC
201: NGSTRLLAEH HDEESSNDNM WTRCRECNEN GLVKCPLCT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.