CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g03220.t01	Wine grape	cytosol	51.75	59.55
CDY14169	Canola	cytosol	31.44	58.78
Bra005786.1-P	Field mustard	cytosol	13.97	58.72
CDX80893	Canola	cytosol	13.97	58.72
CDY11274	Canola	cytosol	13.97	58.72
PGSC0003DMT400023120	Potato	cytosol	48.25	55.25
Solyc09g009860.1.1	Tomato	cytosol	47.38	54.39
CDY04902	Canola	nucleus	41.05	54.18
Bra028812.1-P	Field mustard	nucleus	41.27	54.15
GSMUA_Achr6P13210_001	Banana	cytosol	31.44	52.17
AT5G03870.1	Thale cress	cytosol	43.23	51.56
GSMUA_Achr6P18300_001	Banana	cytosol	42.58	50.0
KRH41800	Soybean	cytosol	27.07	45.93
CDX80894	Canola	nucleus	19.65	45.92
GSMUA_Achr9P02540_001	Banana	cytosol	39.08	45.66
CDY11275	Canola	nucleus	19.43	44.95
HORVU2Hr1G073040.1	Barley	cytosol	34.5	37.62
TraesCS2B01G311500.1	Wheat	mitochondrion	34.5	37.44
Zm00001d003779_P001	Maize	cytosol	36.46	37.36
TraesCS2D01G292800.1	Wheat	mitochondrion	34.5	37.26
TraesCS2A01G295000.1	Wheat	mitochondrion	34.5	37.26
EES10743	Sorghum	cytosol	36.68	37.25
Os04t0412800-01	Rice	cytosol, plastid	35.59	36.38
KRH72143	Soybean	mitochondrion	19.65	34.09
KRH32876	Soybean	cytosol	20.52	34.06
KRH68025	Soybean	cytosol	19.21	33.33
KRH30192	Soybean	plastid	16.59	32.9
KRH31178	Soybean	plastid	16.16	32.31
KRG96283	Soybean	mitochondrion	17.9	32.28
KRG97693	Soybean	plastid	15.94	31.88
KRH14919	Soybean	plastid	16.59	31.41
KRG98239	Soybean	plastid	16.16	31.36
KRH62918	Soybean	cytosol, plastid	17.47	31.13
KRH34627	Soybean	cytosol	24.67	30.62
KRG92161	Soybean	cytosol	25.33	30.53
KRH13399	Soybean	plastid	17.47	29.96
KRH20755	Soybean	plastid	17.47	29.52
KRH60067	Soybean	cytosol	21.62	29.38
KRH72724	Soybean	plastid	17.9	29.18
KRG93517	Soybean	cytosol	26.2	27.46
KRH17081	Soybean	plastid	17.9	27.15
KRH01158	Soybean	cytosol	26.2	25.86
KRG95123	Soybean	plastid	23.8	25.71
KRH73271	Soybean	plastid	16.81	25.58
KRH40113	Soybean	cytosol, mitochondrion	25.33	25.33
KRH66801	Soybean	plastid	17.03	20.8

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.1	UniProt:A0A0R0KTD8	EMBL:ACUP02002090	ncoils:Coil	EnsemblPlantsGene:GLYMA_03G196400
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009055	GO:GO:0009506	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725
GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:Glutaredoxin	InterPro:IPR002109	EnsemblPlants:KRH67928
ProteinID:KRH67928	ProteinID:KRH67928.1	PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF79
SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI00023C2136	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:+:40607197..40608934

Molecular Weight (calculated)

51973.7 Da

IEP (calculated)

8.875

GRAVY (calculated)

-0.611

Length

458 amino acids

Sequence
(BLAST)

001: MANIRIFDRW GPLQTSNGWD KGENFQSRCL HLFVFSNTLK LTKHSERERE RERENFTHSL MGCVSSKHIK KDLKQEEEVT VTNGGGYVNH VVSLTSSTYG
101: ALMLDKEKEQ LQLQPTVEEE SKTSPPRIRE EPEVINAWEL MEGLEEGVPI SNNPMKSPKS TPFLRGFIST DPKPKITPFK FLNQFGSPKS LRKFTGKENK
201: VQVQPPNAGV RRLDYNFSPK GILKPSNFCS PLKGSPIRAR RNSFGTDIKR RSPSPLFDPE LLASYEKELS EEEEQIKRMV WATPKTRRVR KPLDSQTFIK
301: TFEEKLPPGG ENCVVIYTTT LRGIRKTFEE CNKVRSIVES YCVHVVERDV SMDSGFKEEL RKLMGTKQVK VPVVFVKGRL VGGAEEIVKL EEEGKLGVLF
401: EGIPHKALGE CEGCGGVRFV MCVECNGSCK VLDHENHKKT LRCGQCNENG LIQCPMCR

Best Arabidopsis Sequence Match ( AT5G03870.1 )
(BLAST)

001: MGCVSSKLGK KKLIREIRVN NGGDHIVSLT STTYGHLDLD ERAETSPKSL EVTKGEVFES EIIPRRSIKR DDPEIINTWE LMEDLEDSMH VSNPQKISPK
101: SRGIFGKSWK TPVKSVVESP KRGSSKRFGG KENNSRGVSP NQILKPKNIL ETPKRGVMRL SFPLKSEESS VTVTQRRKSY SPMFDPDLVA SYERELSQEK
201: EQIKMVISPV VHESRKTEKT ERILEKFPEK CPPGGEHSVV IYITTLRGIR KTFEDCNVVR SILDSHEVRF SERDVSMHSV FKEEIRGIMG TKHVKIPAVF
301: VKGRMVGSVE EVMRLEEEGK LGILLEGIPA ARLGGSCCRG CGGMRFMMCV VCNGSCKVRE EEKKSMVKCL KCNENGLVLC PICS

Arabidopsis Description

Emb [Source:UniProtKB/TrEMBL;Acc:Q9LZC2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.