CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11274	Canola	cytosol	36.73	82.57
CDX80893	Canola	cytosol	36.73	82.57
CDY04902	Canola	nucleus	96.33	68.01
Bra028812.1-P	Field mustard	nucleus	96.73	67.91
AT5G03870.1	Thale cress	cytosol	85.31	54.43
GSMUA_Achr6P13210_001	Banana	cytosol	51.84	46.01
CDX80894	Canola	nucleus	35.92	44.9
CDY11275	Canola	nucleus	34.29	42.42
CDX93821	Canola	cytosol	42.45	40.0
CDY01245	Canola	cytosol	42.04	39.77
CDY05109	Canola	cytosol	40.82	37.74
CDX90765	Canola	cytosol	40.82	37.45
CDX74801	Canola	cytosol	25.31	37.13
VIT_08s0007g03220.t01	Wine grape	cytosol	57.55	35.43
Solyc09g009860.1.1	Tomato	cytosol	53.88	33.08
PGSC0003DMT400023120	Potato	cytosol	53.88	33.0
CDY00113	Canola	cytosol	17.55	32.33
KRH67928	Soybean	cytosol	58.78	31.44
GSMUA_Achr9P02540_001	Banana	cytosol	50.2	31.38
GSMUA_Achr6P18300_001	Banana	cytosol	49.39	31.03
CDY67834	Canola	cytosol	29.39	29.75
CDY32696	Canola	cytosol, plastid	30.2	29.48
CDX98926	Canola	cytosol	28.57	29.17
CDY59509	Canola	cytosol, plastid	29.8	28.97
CDY32794	Canola	peroxisome	30.2	28.57
TraesCS2A01G295000.1	Wheat	mitochondrion	48.16	27.83
TraesCS2B01G311500.1	Wheat	mitochondrion	47.76	27.73
CDY04039	Canola	cytosol	37.96	27.6
TraesCS2D01G292800.1	Wheat	mitochondrion	47.76	27.59
CDX74802	Canola	cytosol, mitochondrion	27.76	27.53
CDX81007	Canola	cytosol, mitochondrion	24.9	27.48
CDY67732	Canola	plastid	28.98	27.41
HORVU2Hr1G073040.1	Barley	cytosol	46.94	27.38
CDY55763	Canola	cytosol, mitochondrion	24.49	27.03
CDY70634	Canola	plastid	29.39	26.97
CDY06932	Canola	plastid	40.41	26.9
CDX76039	Canola	plastid	37.96	26.5
CDY18861	Canola	mitochondrion	26.53	26.42
CDY70277	Canola	cytosol	36.33	26.41
Zm00001d003779_P001	Maize	cytosol	48.16	26.4
Os04t0412800-01	Rice	cytosol, plastid	47.76	26.12
EES10743	Sorghum	cytosol	47.76	25.94
CDY14762	Canola	cytosol, plastid	37.96	25.69
CDX78539	Canola	cytosol, plastid	27.35	25.57
CDX70521	Canola	plastid	27.35	25.0
CDY30970	Canola	plastid	37.55	25.0
CDY30281	Canola	cytosol	39.18	24.87
CDY67051	Canola	cytosol	38.37	24.8
CDY06138	Canola	plastid	39.18	24.3
CDX72074	Canola	plastid	39.18	24.12
CDX86410	Canola	cytosol	40.0	23.84
CDX85224	Canola	cytosol	40.0	23.67
CDY22520	Canola	plastid	36.73	22.44
CDY35418	Canola	plastid	36.73	22.44
CDY04838	Canola	mitochondrion	32.65	22.35
CDY47842	Canola	cytosol	32.24	21.94
CDY62024	Canola	cytosol	31.84	21.67
CDY20015	Canola	cytosol	35.51	21.53

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.1	GO:A0A078FMS3	UniProt:A0A078FMS3	EnsemblPlants:CDY14169	ProteinID:CDY14169
ProteinID:CDY14169.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725
GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00078723001	InterPro:Glutaredoxin	InterPro:IPR002109
PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF79	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf
UniParc:UPI0004EDD839	SEG:seg	:	:	:	:

Description

BnaC02g02860DBnaC02g02860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FMS3]

Coordinates

chrLK032040:+:775578..776787

Molecular Weight (calculated)

27259.0 Da

IEP (calculated)

7.740

GRAVY (calculated)

-0.348

Length

245 amino acids

Sequence
(BLAST)

001: MGCVSSKPVK KKLVREIRVN NGGDHIVSLT STTYGHLDVQ QRAETSPKGD DFESERRSSA QRDDPEIINT WELMEDLEDS TKVSPKSRGI FGKSWKTPNS
101: VVVYITTLRG IRKTFEDCNA VRSILDSHEV RYSERDVSMH SVFKEEIRGI MGTKQVKIPA VFVRGRMIGS VEEVVRLEEE GKLGILLECM PKARLSGCCC
201: GCGGMRFVMC GVCNGSCKVM DAEKKDMVKC SECNENGLVL CPMCS

Best Arabidopsis Sequence Match ( AT5G03870.1 )
(BLAST)

001: MGCVSSKLGK KKLIREIRVN NGGDHIVSLT STTYGHLDLD ERAETSPKSL EVTKGEVFES EIIPRRSIKR DDPEIINTWE LMEDLEDSMH VSNPQKISPK
101: SRGIFGKSWK TPVKSVVESP KRGSSKRFGG KENNSRGVSP NQILKPKNIL ETPKRGVMRL SFPLKSEESS VTVTQRRKSY SPMFDPDLVA SYERELSQEK
201: EQIKMVISPV VHESRKTEKT ERILEKFPEK CPPGGEHSVV IYITTLRGIR KTFEDCNVVR SILDSHEVRF SERDVSMHSV FKEEIRGIMG TKHVKIPAVF
301: VKGRMVGSVE EVMRLEEEGK LGILLEGIPA ARLGGSCCRG CGGMRFMMCV VCNGSCKVRE EEKKSMVKCL KCNENGLVLC PICS

Arabidopsis Description

Emb [Source:UniProtKB/TrEMBL;Acc:Q9LZC2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.