CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06138	Canola	plastid	95.23	95.95
CDX76039	Canola	plastid	69.85	79.2
CDY30970	Canola	plastid	72.86	78.8
AT3G57070.1	Thale cress	plastid	80.4	76.74
CDY06932	Canola	plastid	57.29	61.96
CDY14762	Canola	cytosol, plastid	55.53	61.05
CDY35418	Canola	plastid	60.8	60.35
CDY22520	Canola	plastid	59.8	59.35
VIT_08s0007g05530.t01	Wine grape	cytosol	34.42	55.92
Solyc04g039900.1.1	Tomato	cytosol, extracellular, nucleus	33.92	49.63
KRG95123	Soybean	plastid	50.75	47.64
KRH66801	Soybean	plastid	41.46	44.0
PGSC0003DMT400007648	Potato	cytosol	42.71	42.93
Solyc10g079560.1.1	Tomato	plastid	46.48	42.63
PGSC0003DMT400020985	Potato	cytosol, plastid	46.48	42.63
CDY11274	Canola	cytosol	11.31	41.28
CDY70634	Canola	plastid	27.64	41.2
CDY67732	Canola	plastid	26.63	40.93
CDX80893	Canola	cytosol	11.06	40.37
CDX74801	Canola	cytosol	16.83	40.12
CDX78539	Canola	cytosol, plastid	25.88	39.31
CDY14169	Canola	cytosol	24.12	39.18
CDX70521	Canola	plastid	25.88	38.43
CDY00113	Canola	cytosol	12.56	37.59
CDX93821	Canola	cytosol	23.37	35.77
CDY01245	Canola	cytosol	22.86	35.14
CDX90765	Canola	cytosol	21.86	32.58
CDY59509	Canola	cytosol, plastid	20.6	32.54
CDY05109	Canola	cytosol	21.61	32.45
CDY32696	Canola	cytosol, plastid	20.1	31.87
CDY70277	Canola	cytosol	26.88	31.75
CDY67051	Canola	cytosol	30.15	31.66
CDY30281	Canola	cytosol	30.65	31.61
CDY32794	Canola	peroxisome	20.35	31.27
CDY04039	Canola	cytosol	26.13	30.86
CDX98926	Canola	cytosol	18.59	30.83
CDY67834	Canola	cytosol	18.59	30.58
CDX74802	Canola	cytosol, mitochondrion	18.84	30.36
CDY20015	Canola	cytosol	30.15	29.7
CDY04902	Canola	nucleus	25.88	29.68
CDY18861	Canola	mitochondrion	18.09	29.27
CDX86410	Canola	cytosol	30.15	29.2
CDX85224	Canola	cytosol	30.15	28.99
CDY55763	Canola	cytosol, mitochondrion	15.08	27.03
CDX81007	Canola	cytosol, mitochondrion	14.82	26.58
CDY62024	Canola	cytosol	21.36	23.61
CDY47842	Canola	cytosol	21.11	23.33
CDY04838	Canola	mitochondrion	18.59	20.67
CDY11275	Canola	nucleus	9.3	18.69
CDX80894	Canola	nucleus	9.05	18.37

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.1	GO:A0A078C7F9	EnsemblPlants:CDX72074	ProteinID:CDX72074	ProteinID:CDX72074.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0009055
GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0045454	EnsemblPlantsGene:GSBRNA2T00155871001	InterPro:Glutaredoxin
InterPro:IPR002109	PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF70	SUPFAM:SSF52833
InterPro:Thioredoxin-like_sf	UniParc:UPI0004EDD043	SEG:seg	:	:	:

Description

BnaC08g28000D

Coordinates

chrLK031795:-:2218854..2220050

Molecular Weight (calculated)

43865.7 Da

IEP (calculated)

6.754

GRAVY (calculated)

-0.530

Length

398 amino acids

Sequence
(BLAST)

001: MGSSTSKTSS SASSTSVSSS PATKLASDSP SPAIHKAFSF PTPLVHHPPA RKGDTHHLVS LTSTSYGSLL LKSSSDQETP PRISISDKNT TDPVSRDSFS
101: PDSVINTWEL MDGLDDEFEF EIPKADKLSS GQDSDVCPKP DPNRNGSALR LDESYEFVRT GQDEEDWVPL SYKPKQPLWK HLSEESFLSG LDPSIVSSYK
201: KALSSKQLTN HSSINVDTRK PLTTTKSLSF ITSEPKSVCA KPRLHGAEDK IVLYFTTLRG IRKTYEDCCC VRMILRGLQV AVDERDISMD SKYRKELQSL
301: LGAGEKPKPV CLPQVFIRGS HIGGVEEIMK LNDNGELAEM LKDFPACECL GTCRSCGDAR FVPCSNCDGS TKVFEEERFK RCPKCNENGL VRCRQCCV

Best Arabidopsis Sequence Match ( AT3G57070.1 )
(BLAST)

001: MGSSASKTAS SVSSASSSSA FSPPPTKFSS DSSSPAVQRA FSFPTPLVHH PPARKGDSHH LVSLTSTSYG SLLLLDLDGS KNSSSDQQTL PRISISGKNT
101: PDPVSPDSVI NTWELMDGLD DEFEFEIPKP GKRLNSDFCS KPDPNRNVSL NGSSLKLDES YEIVRIEEDD GDWVPLTYKP KQPLWKHLSE ESFLSDLDPS
201: IVSSYKKALS SKLLSNHSNT RNPHRPTKSL SCSPSSNPSI LISEEPKSVS SSQLISSPAK PRLPGTEDKI VLYFTTLRGI RKTYEDCCCV RAILRGVQVS
301: VDERDISMDS KYRKELQSVL GAAEKPVCLP QVFIRGTHIG GVEEIMQLND GGELAEMLKD FPACERLGTC RSCGDARFVP CTNCDGSTKV FEEQDERFKR
401: CPKCNENGLV RCRVCCL

Arabidopsis Description

Glutaredoxin family protein [Source:UniProtKB/TrEMBL;Acc:Q9M1J3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.