Factsheet for Solyc04g039900.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol, nucleus

Predictor Summary:

nucleus 3
plastid 1
extracellular 2
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007648	Potato	cytosol	88.97	61.11
VIT_08s0007g05530.t01	Wine grape	cytosol	41.18	45.71
Solyc10g079560.1.1	Tomato	plastid	63.97	40.09
Solyc11g005270.1.1	Tomato	cytosol	26.47	37.89
CDX76039	Canola	plastid	48.53	37.61
CDY30970	Canola	plastid	48.53	35.87
KRG95123	Soybean	plastid	55.15	35.38
CDY14762	Canola	cytosol, plastid	46.69	35.08
CDY06138	Canola	plastid	50.0	34.43
Bra007299.1-P	Field mustard	plastid	50.0	34.43
CDY06932	Canola	plastid	45.96	33.97
Bra016941.1-P	Field mustard	plastid	45.96	33.97
CDX72074	Canola	plastid	49.63	33.92
Bra014646.1-P	Field mustard	plastid	48.9	33.84
AT2G41330.1	Thale cress	plastid	49.63	33.58
CDY22520	Canola	plastid	48.16	32.67
AT3G57070.1	Thale cress	plastid	50.0	32.61
Bra000225.1-P	Field mustard	plastid	47.79	32.42
CDY35418	Canola	plastid	47.79	32.42
Solyc03g078380.1.1	Tomato	cytosol	29.41	30.65
KRH66801	Soybean	plastid	41.54	30.13
Solyc06g082180.1.1	Tomato	cytosol, plastid	25.0	26.77
Solyc02g067400.1.1	Tomato	cytosol	27.57	26.41
Solyc08g083270.1.1	Tomato	cytosol	28.68	23.85
Solyc02g087850.1.1	Tomato	cytosol, plastid	33.46	21.72
Solyc09g009860.1.1	Tomato	cytosol	30.15	20.55
Solyc11g006430.1.1	Tomato	cytosol	24.26	18.28
Solyc06g082170.2.1	Tomato	cytosol, plastid	23.16	15.18
Solyc08g082590.2.1	Tomato	cytosol	20.59	14.25

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035
GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:Glutaredoxin	InterPro:IPR002109
UniProt:K4BRC8	PFAM:PF00462	PANTHER:PTHR10168	PANTHER:PTHR10168:SF70	SUPFAM:SSF52833	EnsemblPlantsGene:Solyc04g039900.1
EnsemblPlants:Solyc04g039900.1.1	InterPro:Thioredoxin-like_sf	UniParc:UPI0002766016	:	:	:

Description

No Description!

Coordinates

chr4:+:12390248..12391174

Molecular Weight (calculated)

31136.0 Da

IEP (calculated)

6.071

GRAVY (calculated)

-0.435

Length

272 amino acids

Sequence
(BLAST)

001: MTLLLEMYQT HIHLQFQTTF FLPTPLIHHP PLCKGDTNHL VSLTSSTYGS LDHRVLDNPT TSPDATINTW ELMEGLDDID FCMVPSPVYD IQKELVKSNE
101: HPSTKPLWKH LSEESLLVKM DPNVTLSYRK ALYSSNQYRH DQGLSSFSRN TDHIYLKGTE DKVVVYFTSL RGIRKTYEDC CSVHMIFKGV RVCVDERDIS
201: MDSSYRKELQ DALQGFAFMN DGFTCESCGE VRFVSCPSCN GSQKFFKEEE GKSMRCPHCN ENGLIRCPEC CP

Best Arabidopsis Sequence Match ( AT3G57070.1 )
(BLAST)

001: MGSSASKTAS SVSSASSSSA FSPPPTKFSS DSSSPAVQRA FSFPTPLVHH PPARKGDSHH LVSLTSTSYG SLLLLDLDGS KNSSSDQQTL PRISISGKNT
101: PDPVSPDSVI NTWELMDGLD DEFEFEIPKP GKRLNSDFCS KPDPNRNVSL NGSSLKLDES YEIVRIEEDD GDWVPLTYKP KQPLWKHLSE ESFLSDLDPS
201: IVSSYKKALS SKLLSNHSNT RNPHRPTKSL SCSPSSNPSI LISEEPKSVS SSQLISSPAK PRLPGTEDKI VLYFTTLRGI RKTYEDCCCV RAILRGVQVS
301: VDERDISMDS KYRKELQSVL GAAEKPVCLP QVFIRGTHIG GVEEIMQLND GGELAEMLKD FPACERLGTC RSCGDARFVP CTNCDGSTKV FEEQDERFKR
401: CPKCNENGLV RCRVCCL

Arabidopsis Description

Glutaredoxin family protein [Source:UniProtKB/TrEMBL;Acc:Q9M1J3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.