Factsheet for VIT_08s0007g05530.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0019g00340.t01	Wine grape	plastid	50.2	45.9
VIT_08s0032g01030.t01	Wine grape	cytosol	32.65	43.72
Solyc04g039900.1.1	Tomato	cytosol, extracellular, nucleus	45.71	41.18
VIT_06s0004g07040.t01	Wine grape	cytosol, mitochondrion	40.82	40.65
PGSC0003DMT400007648	Potato	cytosol	62.86	38.89
KRG95123	Soybean	plastid	66.94	38.68
PGSC0003DMT400020985	Potato	cytosol, plastid	66.94	37.79
Solyc10g079560.1.1	Tomato	plastid	66.12	37.33
CDX76039	Canola	plastid	52.24	36.47
CDY14762	Canola	cytosol, plastid	53.47	36.19
CDY06932	Canola	plastid	54.29	36.14
Bra016941.1-P	Field mustard	plastid	54.29	36.14
CDY30970	Canola	plastid	53.47	35.6
CDY06138	Canola	plastid	55.51	34.43
Bra007299.1-P	Field mustard	plastid	55.51	34.43
CDX72074	Canola	plastid	55.92	34.42
CDY35418	Canola	plastid	55.51	33.92
Bra000225.1-P	Field mustard	plastid	55.51	33.92
AT2G41330.1	Thale cress	plastid	55.51	33.83
CDY22520	Canola	plastid	54.69	33.42
AT3G57070.1	Thale cress	plastid	56.73	33.33
VIT_13s0067g01650.t01	Wine grape	plastid	39.59	32.99
Bra014646.1-P	Field mustard	plastid	52.24	32.57
KRH66801	Soybean	plastid	46.53	30.4
VIT_02s0025g02700.t01	Wine grape	cytosol	34.69	27.51
VIT_02s0025g01710.t01	Wine grape	cytosol	35.1	22.75
VIT_13s0073g00520.t01	Wine grape	cytosol	33.88	22.07
VIT_14s0108g00400.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	38.37	20.89
VIT_08s0007g03220.t01	Wine grape	cytosol	33.88	20.85

Protein Annotations

EntrezGene:100853254	wikigene:100853254	Gene3D:3.40.30.10	MapMan:35.1	ProteinID:CCB55311	ProteinID:CCB55311.1
UniProt:F6HLQ5	EMBL:FN595991	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035
GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:Glutaredoxin	InterPro:IPR002109
EntrezGene:LOC100853254	wikigene:LOC100853254	PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF70
SUPFAM:SSF52833	TIGR:TC68350	InterPro:Thioredoxin-like_sf	UniParc:UPI0002108E08	ArrayExpress:VIT_08s0007g05530	EnsemblPlantsGene:VIT_08s0007g05530
EnsemblPlants:VIT_08s0007g05530.t01	RefSeq:XP_003632735	RefSeq:XP_003632735.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:+:19449442..19450953

Molecular Weight (calculated)

27591.0 Da

IEP (calculated)

7.758

GRAVY (calculated)

-0.464

Length

245 amino acids

Sequence
(BLAST)

001: MGCSASRPNT LLPRPSEESC NLEFQDLVED KTSKPLWKHL SEESLLAKMD SNVVSSYRRA LSSRQLGYNH LKPIRSLGSS PLNSSLSNIR FHLPGAEDRV
101: VLYFTSLRGI RKTYEDCCAV RMILRGFRVM VDERDISMDS NYRKELQNVF GGKVVSLPQV FIRGKYIGGA EEIKQLNEVG ELGKYLEGFP VRETGFVCES
201: CGDARFVPCP NCNGSRKIFE EEDGQQRRCP ECNENGLIRC PGCCS

Best Arabidopsis Sequence Match ( AT3G57070.1 )
(BLAST)

001: MGSSASKTAS SVSSASSSSA FSPPPTKFSS DSSSPAVQRA FSFPTPLVHH PPARKGDSHH LVSLTSTSYG SLLLLDLDGS KNSSSDQQTL PRISISGKNT
101: PDPVSPDSVI NTWELMDGLD DEFEFEIPKP GKRLNSDFCS KPDPNRNVSL NGSSLKLDES YEIVRIEEDD GDWVPLTYKP KQPLWKHLSE ESFLSDLDPS
201: IVSSYKKALS SKLLSNHSNT RNPHRPTKSL SCSPSSNPSI LISEEPKSVS SSQLISSPAK PRLPGTEDKI VLYFTTLRGI RKTYEDCCCV RAILRGVQVS
301: VDERDISMDS KYRKELQSVL GAAEKPVCLP QVFIRGTHIG GVEEIMQLND GGELAEMLKD FPACERLGTC RSCGDARFVP CTNCDGSTKV FEEQDERFKR
401: CPKCNENGLV RCRVCCL

Arabidopsis Description

Glutaredoxin family protein [Source:UniProtKB/TrEMBL;Acc:Q9M1J3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.