CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06932	Canola	plastid	96.13	94.57
CDY35418	Canola	plastid	77.07	69.58
CDY22520	Canola	plastid	76.8	69.33
AT2G41330.1	Thale cress	plastid	73.48	66.17
CDX76039	Canola	plastid	56.91	58.69
CDY30970	Canola	plastid	57.73	56.79
CDX72074	Canola	plastid	61.05	55.53
CDY06138	Canola	plastid	60.5	55.44
VIT_08s0007g05530.t01	Wine grape	cytosol	36.19	53.47
Solyc04g039900.1.1	Tomato	cytosol, extracellular, nucleus	35.08	46.69
KRG95123	Soybean	plastid	50.55	43.16
CDY11274	Canola	cytosol	12.43	41.28
CDX74801	Canola	cytosol	18.78	40.72
CDY67732	Canola	plastid	29.01	40.54
CDX78539	Canola	cytosol, plastid	29.28	40.46
CDY70634	Canola	plastid	29.83	40.45
PGSC0003DMT400007648	Potato	cytosol	44.2	40.4
Solyc10g079560.1.1	Tomato	plastid	48.07	40.09
PGSC0003DMT400020985	Potato	cytosol, plastid	48.07	40.09
KRH66801	Soybean	plastid	40.88	39.47
CDX80893	Canola	cytosol	11.88	39.45
CDX70521	Canola	plastid	29.01	39.18
CDY14169	Canola	cytosol	25.69	37.96
CDY00113	Canola	cytosol	13.81	37.59
CDX93821	Canola	cytosol	24.31	33.85
CDY05109	Canola	cytosol	24.59	33.58
CDX90765	Canola	cytosol	24.59	33.33
CDY01245	Canola	cytosol	23.76	33.2
CDY59509	Canola	cytosol, plastid	22.38	32.14
CDY32696	Canola	cytosol, plastid	21.82	31.47
CDY32794	Canola	peroxisome	22.1	30.89
CDY70277	Canola	cytosol	28.45	30.56
CDX98926	Canola	cytosol	20.17	30.42
CDX74802	Canola	cytosol, mitochondrion	20.72	30.36
CDY67051	Canola	cytosol	31.77	30.34
CDY67834	Canola	cytosol	20.17	30.17
CDY04039	Canola	cytosol	27.9	29.97
CDY30281	Canola	cytosol	31.49	29.53
CDY18861	Canola	mitochondrion	19.89	29.27
CDY04902	Canola	nucleus	27.35	28.53
CDX86410	Canola	cytosol	32.32	28.47
CDX85224	Canola	cytosol	32.32	28.26
CDX81007	Canola	cytosol, mitochondrion	16.57	27.03
CDY20015	Canola	cytosol	30.11	26.98
CDY55763	Canola	cytosol, mitochondrion	16.3	26.58
CDY04838	Canola	mitochondrion	21.55	21.79
CDY47842	Canola	cytosol	21.27	21.39
CDY62024	Canola	cytosol	20.99	21.11
CDX80894	Canola	nucleus	9.94	18.37
CDY11275	Canola	nucleus	9.67	17.68

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.1	GO:A0A078FPH1	UniProt:A0A078FPH1	EnsemblPlants:CDY14762	ProteinID:CDY14762
ProteinID:CDY14762.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725
GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00084620001	InterPro:Glutaredoxin	InterPro:IPR002109
PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF70	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf
UniParc:UPI0004EC7446	SEG:seg	:	:	:	:

Description

BnaC04g47590DBnaC04g47590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FPH1]

Coordinates

chrLK032047:+:222480..223738

Molecular Weight (calculated)

40208.4 Da

IEP (calculated)

4.996

GRAVY (calculated)

-0.465

Length

362 amino acids

Sequence
(BLAST)

001: MGSSSSCSNS SCSASRSPPE KTLNATTVPR AFSFPMPSVH HPPVKKGDTH HLVSLTSTTY GSLLHVDLDV QTLKNNKKTA EQDESLDSLS PDSVINTWEL
101: MNDLEDEFGS TKRDVDVNGS YELVRMEEDW VPLPSKAKQP LWKHMAEESF LSGLDSNIIS SYKRALSSRQ LGKNTKPVSC SHSNQSVVSL SPVSSQYLEE
201: QEKPRLLETE EDNKTIVLYF TSLRGIRKTY EDCCYVRTVL RGFQVAVDER DISMDSEYRK EVQILLGEEK PVCLPQVFIR GVHVGGIEEI KRLNDGGELG
301: EMLKGFPVFE SVGACECCGD ARFVLCTSCG GSTKVFEEQE DGFKRCNGCN ENGLVRCNNC CL

Best Arabidopsis Sequence Match ( AT2G41330.1 )
(BLAST)

001: MGSSVSKTAS SASASSITSI LNSPPETEFN IPSSSVPKAF TFPMPSIHHP PAKKGDTHHF VSLTSTTYGS LVLDDRQTLP HISVSGKSNK KMPETEEARD
101: SFSPDSVINT WELMNDLDDE FDSANSDTSK SNSVVNLDSF SKPITNRDVV INGSAYGSYE DEEDWRLLPF KPKQPLWKHM SEESFLSDLD PNIISSYKRA
201: LSSKQLGKNS SNGHSNHSVL VSLPEYVSSS PLSSQTSEKD QEKPRLLEKE DNENKIVVYF TSLRGIRKTY EDCCCVRAIL RGFQVAVEER DISMDSKYRK
301: ELQNALGEEK PVCLPQVFIR GVRIGGIEEI KILNDGGELA EMLKDFPACE SIGACDSCGD ARFVPCTNCG GSTKVFEEQE DGFKRCNGCN ENGLVRCNKC
401: CL

Arabidopsis Description

At2g41330/F13H10.12 [Source:UniProtKB/TrEMBL;Acc:Q9ZVB8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.