Factsheet for Solyc10g079560.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 5
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020985	Potato	cytosol, plastid	97.47	97.47
VIT_08s0007g05530.t01	Wine grape	cytosol	37.33	66.12
Solyc04g039900.1.1	Tomato	cytosol, extracellular, nucleus	40.09	63.97
KRG95123	Soybean	plastid	50.92	52.12
Solyc11g005270.1.1	Tomato	cytosol	22.58	51.58
CDX76039	Canola	plastid	41.01	50.71
CDY30970	Canola	plastid	41.71	49.18
CDY14762	Canola	cytosol, plastid	40.09	48.07
Bra016941.1-P	Field mustard	plastid	40.32	47.55
CDY06932	Canola	plastid	40.32	47.55
Bra007299.1-P	Field mustard	plastid	42.4	46.58
CDY06138	Canola	plastid	42.4	46.58
CDX72074	Canola	plastid	42.63	46.48
AT3G57070.1	Thale cress	plastid	44.01	45.8
KRH66801	Soybean	plastid	39.4	45.6
Bra014646.1-P	Field mustard	plastid	41.24	45.55
AT2G41330.1	Thale cress	plastid	41.94	45.27
CDY22520	Canola	plastid	41.47	44.89
Bra000225.1-P	Field mustard	plastid	41.01	44.39
CDY35418	Canola	plastid	41.01	44.39
Solyc03g078380.1.1	Tomato	cytosol	25.35	42.15
Solyc06g082180.1.1	Tomato	cytosol, plastid	23.04	39.37
Solyc08g083270.1.1	Tomato	cytosol	23.96	31.8
Solyc02g067400.1.1	Tomato	cytosol	20.05	30.63
Solyc02g087850.1.1	Tomato	cytosol, plastid	27.42	28.4
Solyc09g009860.1.1	Tomato	cytosol	25.35	27.57
Solyc11g006430.1.1	Tomato	cytosol	18.89	22.71
Solyc06g082170.2.1	Tomato	cytosol, plastid	20.97	21.93
Solyc08g082590.2.1	Tomato	cytosol	17.97	19.85

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035
GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:Glutaredoxin	InterPro:IPR002109
UniProt:K4D2J7	PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF185	SUPFAM:SSF52833
EnsemblPlantsGene:Solyc10g079560.1	EnsemblPlants:Solyc10g079560.1.1	InterPro:Thioredoxin-like_sf	UniParc:UPI000276A8A1	SEG:seg	:

Description

No Description!

Coordinates

chr10:-:61071124..61072428

Molecular Weight (calculated)

48175.5 Da

IEP (calculated)

5.459

GRAVY (calculated)

-0.537

Length

434 amino acids

Sequence
(BLAST)

001: MGCSASRSYD FVTADPQNPW NSSSSSHSQS PYSYSDSSST PVSRTLSLPT PLVHHPAMCK GDTHHLVSLT STTYGSLVLI DPQIPNPNPN PNFHGGNFKN
101: PTTQMTKSLN GTEPQDPLSP DSVINTWELM EGLDEFDFHM VQSKIESPRK VKSKSLDIHS ELDTSELEKT YEFVEHSDSK PLWKHLSEEQ LLAKMDPNVA
201: SSYRQALSSK RFVYKESEDC PKPEIVSSIE LKSSNTSLLA ENDFHLKGKE DKIQPEIANT IELESSNASL LSSLLPNNDV HLKGTEDKIV LYFTSLRGIR
301: KTYEECCTVR TIFRGFRVCV DERDVSMDSS YRKELQSALD GKVISLPQVF IGGKYIGGAE EIKQLHEAGE LAELVEGFAV KHSGFVCGSC GDARFVPCPN
401: CNGSRKVFEE EEGKLRRCPS CNENGLIRCT SCCP

Best Arabidopsis Sequence Match ( AT3G57070.1 )
(BLAST)

001: MGSSASKTAS SVSSASSSSA FSPPPTKFSS DSSSPAVQRA FSFPTPLVHH PPARKGDSHH LVSLTSTSYG SLLLLDLDGS KNSSSDQQTL PRISISGKNT
101: PDPVSPDSVI NTWELMDGLD DEFEFEIPKP GKRLNSDFCS KPDPNRNVSL NGSSLKLDES YEIVRIEEDD GDWVPLTYKP KQPLWKHLSE ESFLSDLDPS
201: IVSSYKKALS SKLLSNHSNT RNPHRPTKSL SCSPSSNPSI LISEEPKSVS SSQLISSPAK PRLPGTEDKI VLYFTTLRGI RKTYEDCCCV RAILRGVQVS
301: VDERDISMDS KYRKELQSVL GAAEKPVCLP QVFIRGTHIG GVEEIMQLND GGELAEMLKD FPACERLGTC RSCGDARFVP CTNCDGSTKV FEEQDERFKR
401: CPKCNENGLV RCRVCCL

Arabidopsis Description

Glutaredoxin family protein [Source:UniProtKB/TrEMBL;Acc:Q9M1J3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.