Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400033300 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G10060.1 | PGSC0003DMT400033300 | AT5G10060.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g054410.2.1 | Tomato | nucleus | 91.25 | 81.29 |
| VIT_07s0031g01240.t01 | Wine grape | nucleus | 60.61 | 52.86 |
| KRH59408 | Soybean | nucleus | 53.83 | 50.93 |
| KRG97617 | Soybean | mitochondrion | 36.32 | 50.61 |
| KRH43251 | Soybean | nucleus | 54.92 | 49.31 |
| AT5G65180.1 | Thale cress | nucleus | 43.33 | 45.1 |
| AT5G10060.1 | Thale cress | nucleus | 45.3 | 44.14 |
| CDY40076 | Canola | nucleus | 44.42 | 43.66 |
| Bra006045.1-P | Field mustard | nucleus | 44.2 | 43.44 |
| CDX78365 | Canola | nucleus | 43.98 | 42.95 |
| CDX81155 | Canola | nucleus | 43.11 | 42.55 |
| KRH31254 | Soybean | nucleus | 49.89 | 41.3 |
| GSMUA_Achr8P24850_001 | Banana | cytosol | 46.83 | 39.19 |
| GSMUA_Achr4P09200_001 | Banana | nucleus | 48.36 | 39.05 |
| TraesCS5B01G106400.1 | Wheat | nucleus | 43.33 | 38.67 |
| TraesCS5A01G101800.1 | Wheat | nucleus | 42.67 | 38.09 |
| TraesCS5D01G113800.2 | Wheat | nucleus | 42.67 | 38.09 |
| EES12937 | Sorghum | nucleus | 43.76 | 37.95 |
| Os04t0636700-01 | Rice | nucleus | 43.33 | 37.5 |
| HORVU5Hr1G027930.1 | Barley | nucleus | 41.36 | 36.91 |
| Zm00001d002140_P001 | Maize | cytosol, endoplasmic reticulum, nucleus | 42.23 | 33.57 |
| PGSC0003DMT400052044 | Potato | nucleus | 27.79 | 25.0 |
Protein Annotations
| Gene3D:1.25.40.90 | MapMan:35.2 | InterPro:CID_dom | ncoils:Coil | InterPro:ENTH_VHS | InterPro:IPR006569 |
| InterPro:IPR008942 | UniProt:M1AYX0 | PFAM:PF04818 | EnsemblPlantsGene:PGSC0003DMG400012789 | PGSC:PGSC0003DMG400012789 | EnsemblPlants:PGSC0003DMT400033300 |
| PFscan:PS51391 | PANTHER:PTHR12460 | PANTHER:PTHR12460:SF4 | InterPro:RNA_pol_II-bd | SMART:SM00582 | SUPFAM:SSF48464 |
| UniParc:UPI0002966745 | SEG:seg | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400012789]
Coordinates
chr4:+:52795226..52801323
Molecular Weight (calculated)
50491.4 Da
IEP (calculated)
9.563
GRAVY (calculated)
-0.595
Length
457 amino acids
Sequence
(BLAST)
(BLAST)
001: MTKKVPLLYL ANDILQNSKR KGNEFVTEFW KVLPSALKEI VGKGDEHGKN VVSRLVKIWE ERKVFGSRTQ SLKDIMLGEE LPPPLEFGRK RSRSVRIVKR
101: DTRSIRTKLT VGGTAEKIVS ALHLVVSEHS TEDEEMSKCK SAVHHVRKME KDVDMALARA KHPKRKTLSK ELEEEERMLK QSIEKLKVVE TNRLTLVSQL
201: REALIEQESE LESVRTQIQV AEAQAGEASN MRKCLDDEDY VGERKPSGTT TTPDIYGKAG QTSKKTAAAI AAEVADKLTA SSSSQYIMSS VLSTFAAEAA
301: KSAGLAKPSS YLATNSYISQ PENSLSDSNA LMSAQLHNPP PSNPYQSMLA PHPTVHQGQY HSLANPTSQQ YLQPSAGMMS PYSYGSIAAL PSVPPPPAPP
401: SYMTMTQQPL SMMQQGVAQQ QQAPLPQQPP PPPNFRPVTP VQPPGMMYYS QPYHSQQ
101: DTRSIRTKLT VGGTAEKIVS ALHLVVSEHS TEDEEMSKCK SAVHHVRKME KDVDMALARA KHPKRKTLSK ELEEEERMLK QSIEKLKVVE TNRLTLVSQL
201: REALIEQESE LESVRTQIQV AEAQAGEASN MRKCLDDEDY VGERKPSGTT TTPDIYGKAG QTSKKTAAAI AAEVADKLTA SSSSQYIMSS VLSTFAAEAA
301: KSAGLAKPSS YLATNSYISQ PENSLSDSNA LMSAQLHNPP PSNPYQSMLA PHPTVHQGQY HSLANPTSQQ YLQPSAGMMS PYSYGSIAAL PSVPPPPAPP
401: SYMTMTQQPL SMMQQGVAQQ QQAPLPQQPP PPPNFRPVTP VQPPGMMYYS QPYHSQQ
001: MSSVFSDQIL IDKLAKLNSS QQSIETLSHW CIFNRSKAEL IVTTWEKQFH STEMDQKVPL LYLANDILQN SKRQGNEFVQ EFWNVLPKAL KDIVSQGDDN
101: GKSAVARVIK IWEERRVFGS RSKSLKDVML GEDVPLPLDI SKKRPRGSKS SKRESKSSRT KLASSGGVAE KIASAYHLVV AENSNEEAEM NKCKSAVKRI
201: RKMEKDVEEA CSTAKDNPKR KSLAKELEEE EYLLRQCIEK LKSVQGSRSS LVNQLKDALR EQESELDNLK AQIQVAKEQT EEAQNMQKRL NDEDYTSKQT
301: TAATTITETN DNTKSGQASK MTPASIAAML TASTSSHMIM QSVLSSFAAE ATKTSGLSKS ESTVPVSDTN ASFPSYNNSQ NQTPTTQGQY HVIPNPPPPQ
401: FLKPPVMNNP YAFGNIPLMP PGLPPPPPPP HLIGNQQPQI PQSNSAQQSQ QGPTFQPPGI MYYGAPHHS
101: GKSAVARVIK IWEERRVFGS RSKSLKDVML GEDVPLPLDI SKKRPRGSKS SKRESKSSRT KLASSGGVAE KIASAYHLVV AENSNEEAEM NKCKSAVKRI
201: RKMEKDVEEA CSTAKDNPKR KSLAKELEEE EYLLRQCIEK LKSVQGSRSS LVNQLKDALR EQESELDNLK AQIQVAKEQT EEAQNMQKRL NDEDYTSKQT
301: TAATTITETN DNTKSGQASK MTPASIAAML TASTSSHMIM QSVLSSFAAE ATKTSGLSKS ESTVPVSDTN ASFPSYNNSQ NQTPTTQGQY HVIPNPPPPQ
401: FLKPPVMNNP YAFGNIPLMP PGLPPPPPPP HLIGNQQPQI PQSNSAQQSQ QGPTFQPPGI MYYGAPHHS
Arabidopsis Description
At5g10060 [Source:UniProtKB/TrEMBL;Acc:Q8GUK8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.