Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g094360.2.1 | Tomato | nucleus | 89.76 | 88.03 |
| GSMUA_Achr8P17800_001 | Banana | cytosol | 23.43 | 58.62 |
| VIT_14s0068g01560.t01 | Wine grape | cytosol | 58.86 | 57.06 |
| GSMUA_Achr4P15940_001 | Banana | cytosol | 21.26 | 53.47 |
| KRH06897 | Soybean | nucleus | 53.35 | 51.62 |
| KRG94593 | Soybean | nucleus | 52.36 | 50.96 |
| CDY13671 | Canola | nucleus | 49.21 | 49.21 |
| Bra025240.1-P | Field mustard | nucleus | 48.23 | 48.51 |
| Bra039100.1-P | Field mustard | nucleus, plastid | 42.13 | 46.72 |
| CDY20069 | Canola | nucleus, plastid | 42.32 | 46.64 |
| AT3G26990.1 | Thale cress | nucleus | 45.08 | 44.64 |
| CDY52407 | Canola | plastid | 49.02 | 42.71 |
| CDY00175 | Canola | mitochondrion | 42.72 | 41.02 |
| GSMUA_Achr11P... | Banana | nucleus | 41.54 | 40.5 |
| GSMUA_Achr10P... | Banana | nucleus | 41.14 | 39.96 |
| HORVU3Hr1G095600.3 | Barley | extracellular | 11.02 | 38.1 |
| TraesCS3D01G429500.1 | Wheat | nucleus | 25.79 | 28.54 |
| TraesCS3A01G437300.1 | Wheat | nucleus | 26.18 | 28.24 |
| PGSC0003DMT400033300 | Potato | nucleus | 25.0 | 27.79 |
| EES04124 | Sorghum | nucleus | 27.56 | 27.72 |
| Os01t0925000-02 | Rice | nucleus | 26.57 | 27.55 |
| Zm00001d011975_P002 | Maize | nucleus | 27.17 | 27.06 |
| TraesCS3B01G471400.1 | Wheat | endoplasmic reticulum | 26.18 | 26.49 |
| HORVU3Hr1G095520.4 | Barley | cytosol, nucleus | 16.14 | 22.28 |
| Zm00001d042291_P002 | Maize | mitochondrion, nucleus | 17.72 | 20.32 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400052044 | EnsemblPlantsGene:PGSC0003DMG400020201 | Gene3D:1.25.40.90 | InterPro:CID_dom | InterPro:ENTH_VHS | InterPro:IPR006569 |
| InterPro:IPR008942 | InterPro:RNA_pol_II-bd | ncoils:Coil | PANTHER:PTHR12460 | PANTHER:PTHR12460:SF9 | PFAM:PF04818 |
| PFscan:PS51391 | PGSC:PGSC0003DMG400020201 | SEG:seg | SMART:SM00582 | SUPFAM:SSF48464 | UniParc:UPI000295CDD7 |
| UniProt:M1BSP7 | MapMan:35.2 | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400020201]
Coordinates
chr2:-:48132120..48140721
Molecular Weight (calculated)
55789.5 Da
IEP (calculated)
6.101
GRAVY (calculated)
-0.482
Length
508 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSTFNTQIL VDKLEMLNSS QQSIETLSHW CIFHMTKAKQ VVETWAQQFH CSPREQRLSF LYLANDILQN SRRKGAEFVA EFWKVLPDAL RDVIENGNEF
101: GRNAALRLIS IWDERKVFGS RGQILKEEFA GKNVGNGKHS GGKVRNSAGD ALDKIVSSYQ ILYGGQIDED AILSRAKNAI SCVEKIDKEI GSDLNPGHLN
201: GSGIVDELKG QHTILKDCVE QLTTVESYRA NLISHLREVL QEQEYKLDQV RNHLQAAQSH ADQVGSICGQ LLNFDGNGQI LVEQNRKEAN TSQAPHTFIS
301: GNREQSAPVM YTRQVSYEKS GNLDEDMKSA AAAVAAKLTA STSSAQMLTY VLSSLASEGV IGNSTKESSH DNQPEKRMKL ENDRSFYAPP QNPQEPITFF
401: SQPNSVQHNL PSTGGESTPI EPPPLPSSPP PLAPLPPMQP YPVPQFIQTS GQLPSSAFVY ATSQQPSTLA GFVPPVNGIS PFTSSIAYQG YSSDSSLYSQ
501: SMAPVTRQ
101: GRNAALRLIS IWDERKVFGS RGQILKEEFA GKNVGNGKHS GGKVRNSAGD ALDKIVSSYQ ILYGGQIDED AILSRAKNAI SCVEKIDKEI GSDLNPGHLN
201: GSGIVDELKG QHTILKDCVE QLTTVESYRA NLISHLREVL QEQEYKLDQV RNHLQAAQSH ADQVGSICGQ LLNFDGNGQI LVEQNRKEAN TSQAPHTFIS
301: GNREQSAPVM YTRQVSYEKS GNLDEDMKSA AAAVAAKLTA STSSAQMLTY VLSSLASEGV IGNSTKESSH DNQPEKRMKL ENDRSFYAPP QNPQEPITFF
401: SQPNSVQHNL PSTGGESTPI EPPPLPSSPP PLAPLPPMQP YPVPQFIQTS GQLPSSAFVY ATSQQPSTLA GFVPPVNGIS PFTSSIAYQG YSSDSSLYSQ
501: SMAPVTRQ
001: MGSSFNAQIL VEKLAKLNNS QASIETLSHW CIFHMNKAKH VVETWGRQFH CAPREQRLAY LYLANDILQN SRRKGSEFVG EFWKVLPDAL RDMIENGDDF
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ
Arabidopsis Description
At3g26990 [Source:UniProtKB/TrEMBL;Acc:Q66GK1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.