CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER95951
KXG37365

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26990.1	EER95951	AT3G22960.1	21798944
AT3G26990.1	KXG37365	AT3G22960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011975_P002	Maize	nucleus	73.47	72.75
HORVU3Hr1G095600.3	Barley	extracellular	15.05	51.7
Os01t0925000-02	Rice	nucleus	48.12	49.59
TraesCS3A01G437300.1	Wheat	nucleus	45.94	49.26
TraesCS3D01G429500.1	Wheat	nucleus	44.36	48.8
GSMUA_Achr8P17800_001	Banana	cytosol	18.61	46.31
TraesCS3B01G471400.1	Wheat	endoplasmic reticulum	45.35	45.62
GSMUA_Achr4P15940_001	Banana	cytosol	17.43	43.56
HORVU3Hr1G095520.4	Barley	cytosol, nucleus	31.49	43.21
Bra039100.1-P	Field mustard	nucleus, plastid	26.73	29.48
CDY20069	Canola	nucleus, plastid	26.53	29.07
VIT_14s0068g01560.t01	Wine grape	cytosol	29.9	28.82
KRG94593	Soybean	nucleus	28.91	27.97
PGSC0003DMT400052044	Potato	nucleus	27.72	27.56
KRH06897	Soybean	nucleus	28.51	27.43
Solyc02g094360.2.1	Tomato	nucleus	27.72	27.03
AT3G26990.1	Thale cress	nucleus	27.13	26.71
CDY13671	Canola	nucleus	26.53	26.38
VIT_17s0000g00860.t01	Wine grape	nucleus	27.92	26.31
Bra025240.1-P	Field mustard	nucleus	25.54	25.54
CDY00175	Canola	mitochondrion	26.73	25.52
EES12937	Sorghum	nucleus	24.95	23.91
CDY52407	Canola	plastid	26.14	22.64
EES16544	Sorghum	nucleus	24.55	21.05
EES09184	Sorghum	nucleus	23.56	20.1

Protein Annotations

EnsemblPlants:EES04124	EnsemblPlantsGene:SORBI_3003G409200	Gene3D:1.25.40.90	InterPro:CID_dom	InterPro:ENTH_VHS	InterPro:IPR006569
InterPro:IPR008942	InterPro:RNA_pol_II-bd	ncoils:Coil	PANTHER:PTHR12460	PANTHER:PTHR12460:SF9	PFAM:PF04818
PFscan:PS51391	ProteinID:EES04124	ProteinID:EES04124.2	SEG:seg	SMART:SM00582	SUPFAM:SSF48464
unigene:Sbi.6316	UniParc:UPI00081AE1A1	UniProt:C5XGX1	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr3:-:71677799..71690529

Molecular Weight (calculated)

55824.5 Da

IEP (calculated)

8.290

GRAVY (calculated)

-0.621

Length

505 amino acids

Sequence
(BLAST)

001: MSAGFNKQIL AQKLSKLNSS QQSIETLSHW CVFHHRYCQQ VVGTWDCEFH AAPEERRVAL LYLANDIMQN SRKEGNGYIT EFMRVIPAAL NEVLTATDDF
101: GRNVPKRLID IWEDRKIFDT QAQSLKDDFF RRLKDIRNKL KNTGNELLEK VVSSCKHVLN APMDEDTLMR KCQAALISFD ELNKTYGNNF VLGSSNRSGF
201: MQELQEQHSI LRNSIDQLKT SESLRATLIS HLKEALNEQE LKVEQVRSQL QAAQPRFKRA AELCVGLGSN MERHQPSNQG LKRSSLSDPL STVAPEAAKS
301: LQKGQSTAVL YSKEGNGVEH NVTETKLAAG AASDNLPSRV NGGNTMLKIE EHTSGNKRQK LEDDTHISEP KSQSPPPRPP PLPHPDAFKP PPPLYPSSPE
401: PSPPPLPPNS PPPHIIPPPP LTPPPAMPPQ MISHLPAPAG TFVPFPAGPP GPMYCTYPPF TPVVNFPMTS QPGFPSPNPP PPFQGLAGTF YGPQFPTPPP
501: PADRK

Best Arabidopsis Sequence Match ( AT3G26990.1 )
(BLAST)

001: MGSSFNAQIL VEKLAKLNNS QASIETLSHW CIFHMNKAKH VVETWGRQFH CAPREQRLAY LYLANDILQN SRRKGSEFVG EFWKVLPDAL RDMIENGDDF
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ

Arabidopsis Description

At3g26990 [Source:UniProtKB/TrEMBL;Acc:Q66GK1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.