CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX92969
CDX94878
CDY35484
CDY40829

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26990.1	CDX92969	AT3G22960.1	21798944
AT3G26990.1	CDX94878	AT3G22960.1	21798944
AT3G26990.1	CDY35484	AT3G22960.1	21798944
AT3G26990.1	CDY40829	AT3G22960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20069	Canola	nucleus, plastid	81.29	93.28
CDY13671	Canola	nucleus	63.52	66.14
AT3G26990.1	Thale cress	nucleus	63.89	65.89
CDY52407	Canola	plastid	64.65	58.66
GSMUA_Achr8P17800_001	Banana	cytosol	19.28	50.25
GSMUA_Achr4P15940_001	Banana	cytosol	18.53	48.51
KRG94593	Soybean	nucleus	42.34	42.91
PGSC0003DMT400052044	Potato	nucleus	41.02	42.72
KRH06897	Soybean	nucleus	41.59	41.9
Solyc02g094360.2.1	Tomato	nucleus	40.64	41.51
VIT_17s0000g00860.t01	Wine grape	nucleus	40.08	39.55
HORVU3Hr1G095600.3	Barley	extracellular	10.59	38.1
GSMUA_Achr10P...	Banana	nucleus	37.05	37.48
GSMUA_Achr11P...	Banana	nucleus	36.48	37.04
CDX81155	Canola	nucleus	27.79	31.75
CDX78365	Canola	nucleus	27.79	31.41
CDY40076	Canola	nucleus	26.65	30.32
Os01t0925000-02	Rice	nucleus	26.65	28.78
TraesCS3A01G437300.1	Wheat	nucleus	24.39	27.39
TraesCS3D01G429500.1	Wheat	nucleus	23.63	27.23
EES04124	Sorghum	nucleus	25.52	26.73
TraesCS3B01G471400.1	Wheat	endoplasmic reticulum	24.95	26.29
Zm00001d011975_P002	Maize	nucleus	24.76	25.69
HORVU3Hr1G095520.4	Barley	cytosol, nucleus	14.56	20.92
Zm00001d042291_P002	Maize	mitochondrion, nucleus	17.2	20.54

Protein Annotations

EnsemblPlants:CDY00175	EnsemblPlantsGene:GSBRNA2T00109692001	Gene3D:1.25.40.90	InterPro:CID_dom	InterPro:ENTH_VHS	InterPro:IPR006569
InterPro:IPR008942	InterPro:RNA_pol_II-bd	ncoils:Coil	PANTHER:PTHR12460	PANTHER:PTHR12460:SF9	PFAM:PF04818
PFscan:PS51391	ProteinID:CDY00175	ProteinID:CDY00175.1	SEG:seg	SMART:SM00582	SUPFAM:SSF48464
UniParc:UPI0004EEBBC9	MapMan:35.2	:	:	:	:

Description

BnaC09g01260D

Coordinates

chrLK031916:-:1162951..1165373

Molecular Weight (calculated)

58132.1 Da

IEP (calculated)

8.695

GRAVY (calculated)

-0.393

Length

529 amino acids

Sequence
(BLAST)

001: MTPKPSRKIT RWSFPSLFSS TAQLLRRFLG GVIRQNGAVI FLLQSLDLIP LSNNNLLLLS TRKGADFEVM GTMGSSFNAQ VLAEKLAKLN SSQASIETLS
101: HWCIFHMNKA KHVVETWGRQ FHCSPREQRL AYLYLANDIL QNSRRRGSEF VGEFWNVLPD ALRDVIENGD DSERKSALRL VNIWEERKVF GSSGQILKEE
201: ILRKLPDNGG VVPLKKQANA TPLERVVSAV EALHGGQINV DDVVGKCTNV VGYLEKAAQE VERDLTSGHT PGSAVVKEVQ GQHTILRDCI EQLAAMETSR
301: SSLISHLREA LQEQELKLEQ VRSHLQIARF QSDRTGDLCK QLSSSSQPPE EVIKVSFTSS APVMFASNPP AQPVVVVDPR KTEAAAMVAK LTASTSSAEM
401: LSYVLSSFAS ENNPPAVTET HPPEKRPKLQ QNTSTATTSP PPPPPPAFQL QPQFLQPLQP PGPVNQTPFS YTIATTTQQQ QQGPWIPGLS SLPTTSAPSG
501: NNSYQKFQGQ DGFYGTTNSP SSMTPVTRQ

Best Arabidopsis Sequence Match ( AT3G26990.1 )
(BLAST)

001: MGSSFNAQIL VEKLAKLNNS QASIETLSHW CIFHMNKAKH VVETWGRQFH CAPREQRLAY LYLANDILQN SRRKGSEFVG EFWKVLPDAL RDMIENGDDF
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ

Arabidopsis Description

At3g26990 [Source:UniProtKB/TrEMBL;Acc:Q66GK1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.