CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
cytosol 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX92969
CDX94878
CDY35484
CDY40829

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26990.1	CDX92969	AT3G22960.1	21798944
AT3G26990.1	CDX94878	AT3G22960.1	21798944
AT3G26990.1	CDY35484	AT3G22960.1	21798944
AT3G26990.1	CDY40829	AT3G22960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025240.1-P	Field mustard	nucleus	92.91	93.47
CDY52407	Canola	plastid	88.98	77.53
AT3G26990.1	Thale cress	nucleus	73.43	72.71
CDY20069	Canola	nucleus, plastid	65.55	72.23
CDY00175	Canola	mitochondrion	66.14	63.52
GSMUA_Achr8P17800_001	Banana	cytosol	22.64	56.65
GSMUA_Achr4P15940_001	Banana	cytosol	21.06	52.97
PGSC0003DMT400052044	Potato	nucleus	49.21	49.21
KRG94593	Soybean	nucleus	49.61	48.28
Solyc02g094360.2.1	Tomato	nucleus	49.02	48.07
KRH06897	Soybean	nucleus	48.82	47.24
VIT_17s0000g00860.t01	Wine grape	nucleus	46.06	43.66
GSMUA_Achr10P...	Banana	nucleus	40.94	39.77
GSMUA_Achr11P...	Banana	nucleus	40.55	39.54
HORVU3Hr1G095600.3	Barley	extracellular	11.42	39.46
CDX78365	Canola	nucleus	29.53	32.05
CDX81155	Canola	nucleus	28.74	31.53
CDY40076	Canola	nucleus	28.74	31.4
Os01t0925000-02	Rice	nucleus	28.15	29.18
TraesCS3A01G437300.1	Wheat	nucleus	25.79	27.81
TraesCS3D01G429500.1	Wheat	nucleus	24.8	27.45
EES04124	Sorghum	nucleus	26.38	26.53
TraesCS3B01G471400.1	Wheat	endoplasmic reticulum	25.98	26.29
Zm00001d011975_P002	Maize	nucleus	25.79	25.69
Zm00001d042291_P002	Maize	mitochondrion, nucleus	17.32	19.86
HORVU3Hr1G095520.4	Barley	cytosol, nucleus	14.37	19.84

Protein Annotations

EnsemblPlants:CDY13671	EnsemblPlantsGene:GSBRNA2T00078094001	Gene3D:1.25.40.90	InterPro:CID_dom	InterPro:ENTH_VHS	InterPro:IPR006569
InterPro:IPR008942	InterPro:RNA_pol_II-bd	ncoils:Coil	PANTHER:PTHR12460	PANTHER:PTHR12460:SF9	PFAM:PF04818
PFscan:PS51391	ProteinID:CDY13671	ProteinID:CDY13671.1	SEG:seg	SMART:SM00582	SUPFAM:SSF48464
UniParc:UPI0004EF2798	UniProt:A0A078FKL1	MapMan:35.2	:	:	:

Description

BnaA06g32520DBnaA06g32520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FKL1]

Coordinates

chrLK032037:+:539975..543143

Molecular Weight (calculated)

55678.5 Da

IEP (calculated)

6.722

GRAVY (calculated)

-0.508

Length

508 amino acids

Sequence
(BLAST)

001: MGSSFNAQIL VEKLSKLNNS QASIETLSHW CIFHMNKAKH VVETWGRQFH CSPREQRLAY LYLANDILQN SRRKGSEFVG EFWKVLPEAL RDVIENGDDF
101: GRKAARRLVN IWEERKVFGS HGQILKEEIL GKQPENGARN GALVPLKLKQ ANGTSLERVV SSVEALHGVQ IDEDIIVGKC TNAAGYLERA TQEVEKDLSS
201: GHTPGPAVVT EVQGQHAILR DCIEQLGAVE TSRISLISHL REALQEQELK LEQVRNHLQI ARFQSDRTGD LCKQLLDHGN SSQPSATEEA IKVSPATSAP
301: QSFTHIDVEQ SAPVMFASNP PTQSVVDPRK TAAAAVVARL TASTSSAEML SHVLSSLASE GIIGNNPPAV TGTPSSDEYP PEKRPKLQNH DHSYLQLQQQ
401: NAATTSTATT TSPLLLPPPP PPPYQLQPQY LQPLQPPGPV NQTPFNYTIA TTSAPTQQQQ QQQGQWVHGL TPLPTTSAPS DSSYQKFQGQ DGFYGINPSV
501: SMTPVTRQ

Best Arabidopsis Sequence Match ( AT3G26990.1 )
(BLAST)

001: MGSSFNAQIL VEKLAKLNNS QASIETLSHW CIFHMNKAKH VVETWGRQFH CAPREQRLAY LYLANDILQN SRRKGSEFVG EFWKVLPDAL RDMIENGDDF
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ

Arabidopsis Description

At3g26990 [Source:UniProtKB/TrEMBL;Acc:Q66GK1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.