Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G26990.1 | CDX92969 | AT3G22960.1 | 21798944 |
| AT3G26990.1 | CDX94878 | AT3G22960.1 | 21798944 |
| AT3G26990.1 | CDY35484 | AT3G22960.1 | 21798944 |
| AT3G26990.1 | CDY40829 | AT3G22960.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039100.1-P | Field mustard | nucleus, plastid | 95.44 | 96.07 |
| CDY00175 | Canola | mitochondrion | 93.28 | 81.29 |
| AT3G26990.1 | Thale cress | nucleus | 73.54 | 66.08 |
| CDY13671 | Canola | nucleus | 72.23 | 65.55 |
| CDY52407 | Canola | plastid | 72.23 | 57.12 |
| GSMUA_Achr8P17800_001 | Banana | cytosol | 21.69 | 49.26 |
| GSMUA_Achr4P15940_001 | Banana | cytosol | 20.82 | 47.52 |
| KRG94593 | Soybean | nucleus | 48.37 | 42.72 |
| PGSC0003DMT400052044 | Potato | nucleus | 46.64 | 42.32 |
| KRH06897 | Soybean | nucleus | 47.51 | 41.71 |
| Solyc02g094360.2.1 | Tomato | nucleus | 45.99 | 40.93 |
| VIT_17s0000g00860.t01 | Wine grape | nucleus | 45.77 | 39.37 |
| HORVU3Hr1G095600.3 | Barley | extracellular | 12.36 | 38.78 |
| GSMUA_Achr10P... | Banana | nucleus | 41.43 | 36.52 |
| GSMUA_Achr11P... | Banana | nucleus | 41.21 | 36.47 |
| CDX81155 | Canola | nucleus | 32.1 | 31.97 |
| CDX78365 | Canola | nucleus | 31.67 | 31.2 |
| CDY40076 | Canola | nucleus | 30.37 | 30.11 |
| Os01t0925000-02 | Rice | nucleus | 30.15 | 28.37 |
| TraesCS3A01G437300.1 | Wheat | nucleus | 27.33 | 26.75 |
| TraesCS3D01G429500.1 | Wheat | nucleus | 26.46 | 26.58 |
| EES04124 | Sorghum | nucleus | 29.07 | 26.53 |
| TraesCS3B01G471400.1 | Wheat | endoplasmic reticulum | 27.77 | 25.5 |
| Zm00001d011975_P002 | Maize | nucleus | 27.77 | 25.1 |
| Zm00001d042291_P002 | Maize | mitochondrion, nucleus | 19.52 | 20.32 |
| HORVU3Hr1G095520.4 | Barley | cytosol, nucleus | 15.84 | 19.84 |
Protein Annotations
| EnsemblPlants:CDY20069 | EnsemblPlantsGene:GSBRNA2T00009913001 | Gene3D:1.25.40.90 | InterPro:CID_dom | InterPro:ENTH_VHS | InterPro:IPR006569 |
| InterPro:IPR008942 | InterPro:RNA_pol_II-bd | ncoils:Coil | PANTHER:PTHR12460 | PFAM:PF04818 | PFscan:PS51391 |
| ProteinID:CDY20069 | ProteinID:CDY20069.1 | SEG:seg | SMART:SM00582 | SUPFAM:SSF48464 | UniParc:UPI0004EEA064 |
| UniProt:A0A078G3V2 | MapMan:35.2 | : | : | : | : |
Description
BnaA09g01820DBnaA09g01820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G3V2]
Coordinates
chrLK032102:-:684638..686901
Molecular Weight (calculated)
50654.7 Da
IEP (calculated)
6.961
GRAVY (calculated)
-0.483
Length
461 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSSFNAQVL AEKLAKLNSS QASIETLSHW CIFHMNKAKH VVETWGRQFH SSPREQRLAY LYLANDILQN SRRRGSEFVG EFWSVLPDAL RDVIENGDDS
101: ERKSALRLVN IWEERKVFGS SGQILKEEIL RKVSDGGVVP LNLKQANAIP LERVVSAVEA LHGGQINLDD VVGKCTNVVG YLEKAAQEVE RDLSSGHTPG
201: PVVVKEVQGQ HTILRDCIVQ LEAMETSRTS LISHLREALQ EQEHKLEQVR NHLQIARFQS DRTGDLCKQL SSSSQPPEEV IKVSFTASAP VMFASNPPAQ
301: PVVVVDPRKT EAAAMVAKLT ASTSSAEMLS YVLSSFASEN NPPAATETHP PEKRPKLQQN TSTATTTSPP PPPPPAFQLQ PQFLQPLQPP GPVNQTPFSY
401: TIATTTQQQQ HQQGPWIPGL TSLPTTSAPS DNNSYQKKFQ GQDGFYGTSN SPSSMAPVTR Q
101: ERKSALRLVN IWEERKVFGS SGQILKEEIL RKVSDGGVVP LNLKQANAIP LERVVSAVEA LHGGQINLDD VVGKCTNVVG YLEKAAQEVE RDLSSGHTPG
201: PVVVKEVQGQ HTILRDCIVQ LEAMETSRTS LISHLREALQ EQEHKLEQVR NHLQIARFQS DRTGDLCKQL SSSSQPPEEV IKVSFTASAP VMFASNPPAQ
301: PVVVVDPRKT EAAAMVAKLT ASTSSAEMLS YVLSSFASEN NPPAATETHP PEKRPKLQQN TSTATTTSPP PPPPPAFQLQ PQFLQPLQPP GPVNQTPFSY
401: TIATTTQQQQ HQQGPWIPGL TSLPTTSAPS DNNSYQKKFQ GQDGFYGTSN SPSSMAPVTR Q
001: MGSSFNAQIL VEKLAKLNNS QASIETLSHW CIFHMNKAKH VVETWGRQFH CAPREQRLAY LYLANDILQN SRRKGSEFVG EFWKVLPDAL RDMIENGDDF
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ
Arabidopsis Description
At3g26990 [Source:UniProtKB/TrEMBL;Acc:Q66GK1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.