Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os07t0181000-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G26990.1 | Os07t0181000-01 | AT3G22960.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G437300.1 | Wheat | nucleus | 53.67 | 55.84 |
| TraesCS3D01G429500.1 | Wheat | nucleus | 51.63 | 55.12 |
| HORVU3Hr1G095600.3 | Barley | extracellular | 16.12 | 53.74 |
| TraesCS3B01G471400.1 | Wheat | endoplasmic reticulum | 54.29 | 52.99 |
| HORVU3Hr1G095520.4 | Barley | cytosol, nucleus | 37.76 | 50.27 |
| Zm00001d011975_P002 | Maize | nucleus | 51.22 | 49.22 |
| GSMUA_Achr4P15940_001 | Banana | cytosol | 20.2 | 49.01 |
| GSMUA_Achr8P17800_001 | Banana | cytosol | 20.0 | 48.28 |
| EES04124 | Sorghum | nucleus | 49.59 | 48.12 |
| Zm00001d042291_P002 | Maize | mitochondrion, nucleus | 35.92 | 39.73 |
| Bra039100.1-P | Field mustard | nucleus, plastid | 28.37 | 30.35 |
| CDY20069 | Canola | nucleus, plastid | 28.37 | 30.15 |
| VIT_14s0068g01560.t01 | Wine grape | cytosol | 31.22 | 29.2 |
| KRG94593 | Soybean | nucleus | 30.82 | 28.93 |
| AT3G26990.1 | Thale cress | nucleus | 30.2 | 28.85 |
| Bra025240.1-P | Field mustard | nucleus | 29.18 | 28.32 |
| KRH06897 | Soybean | nucleus | 30.2 | 28.19 |
| CDY13671 | Canola | nucleus | 29.18 | 28.15 |
| VIT_17s0000g00860.t01 | Wine grape | nucleus | 29.8 | 27.24 |
| CDY00175 | Canola | mitochondrion | 28.78 | 26.65 |
| PGSC0003DMT400052044 | Potato | nucleus | 27.55 | 26.57 |
| Solyc02g094360.2.1 | Tomato | nucleus | 27.76 | 26.25 |
| CDY52407 | Canola | plastid | 28.98 | 24.36 |
| Os04t0636700-01 | Rice | nucleus | 25.51 | 23.67 |
| Os12t0126800-01 | Rice | nucleus | 26.53 | 22.22 |
| Os11t0130100-01 | Rice | cytosol, nucleus | 16.12 | 16.81 |
Protein Annotations
| EMBL:AK103764 | EnsemblPlants:Os01t0925000-02 | EnsemblPlantsGene:Os01g0925000 | Gene3D:1.25.40.90 | InterPro:CID_dom | InterPro:ENTH_VHS |
| InterPro:IPR006569 | InterPro:IPR008942 | InterPro:RNA_pol_II-bd | ncoils:Coil | PANTHER:PTHR12460 | PANTHER:PTHR12460:SF9 |
| PFAM:PF04818 | PFscan:PS51391 | ProteinID:BAD88040.1 | ProteinID:BAF07166.1 | ProteinID:BAS75981.1 | SEG:seg |
| SMART:SM00582 | SUPFAM:SSF48464 | UniParc:UPI00004C2B5C | UniProt:Q5JKG7 | MapMan:35.2 | : |
Description
ENTH/VHS domain containing protein. (Os01t0925000-01);ENTH/VHS domain containing protein. (Os01t0925000-02)
Coordinates
chr1:-:40540981..40554592
Molecular Weight (calculated)
54932.4 Da
IEP (calculated)
6.567
GRAVY (calculated)
-0.793
Length
490 amino acids
Sequence
(BLAST)
(BLAST)
001: MNAGFSPQIL AQKLLKLNNS RQSIETLSHW CVFHYRHCRQ VVETWESDFH SAPRERRVSL LYLANDIVQN SKKDSGRYVN EFWRVIPAAL NDVFVNGDDF
101: GRNVVQRLVD IWEERNIFGS HGQSLKEDYS RRFKEFKSKS RNSSGELLEK VISCYKHMLN AHVDDDTLMR KCQNALSFVD NLSNEYENNS ILDCSNGSGF
201: VEELQEQHNI LRDSIEQFKT SELLRGNLIS CLKEALHEQE FKMERARSQI KEVQSRYKKA DDLCQKLGIH VERQEQPNHG PKNSGSEMHG SFGPDSANAS
301: SFEKGQSSAV MYSQENGGEH EIPNGVFSSR ATKDNIEQKL EEHSTNKRQK LQNDVYVSRP QSPPPPLPSD AFEQPPPPPE HPPPPESTSP PPPPTSDPPP
401: VPPPPPTTGS FMPIPSAPFA GLPVPAGPMT AVPYNSYPVF PPMNYPMVNI PPPFPSAPNT PPGFQGLAGP FYGPPYPAPP PPPPPPMNRK
101: GRNVVQRLVD IWEERNIFGS HGQSLKEDYS RRFKEFKSKS RNSSGELLEK VISCYKHMLN AHVDDDTLMR KCQNALSFVD NLSNEYENNS ILDCSNGSGF
201: VEELQEQHNI LRDSIEQFKT SELLRGNLIS CLKEALHEQE FKMERARSQI KEVQSRYKKA DDLCQKLGIH VERQEQPNHG PKNSGSEMHG SFGPDSANAS
301: SFEKGQSSAV MYSQENGGEH EIPNGVFSSR ATKDNIEQKL EEHSTNKRQK LQNDVYVSRP QSPPPPLPSD AFEQPPPPPE HPPPPESTSP PPPPTSDPPP
401: VPPPPPTTGS FMPIPSAPFA GLPVPAGPMT AVPYNSYPVF PPMNYPMVNI PPPFPSAPNT PPGFQGLAGP FYGPPYPAPP PPPPPPMNRK
001: MGSSFNAQIL VEKLAKLNNS QASIETLSHW CIFHMNKAKH VVETWGRQFH CAPREQRLAY LYLANDILQN SRRKGSEFVG EFWKVLPDAL RDMIENGDDF
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ
Arabidopsis Description
At3g26990 [Source:UniProtKB/TrEMBL;Acc:Q66GK1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.