Factsheet for Bra039100.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001896.1-P
Bra023780.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26990.1	Bra001896.1-P	AT3G22960.1	21798944
AT3G26990.1	Bra023780.1-P	AT3G22960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20069	Canola	nucleus, plastid	96.07	95.44
AT3G26990.1	Thale cress	nucleus	73.14	65.3
Bra025240.1-P	Field mustard	nucleus	71.62	64.95
GSMUA_Achr8P17800_001	Banana	cytosol	22.05	49.75
GSMUA_Achr4P15940_001	Banana	cytosol	21.18	48.02
KRG94593	Soybean	nucleus	48.91	42.91
PGSC0003DMT400052044	Potato	nucleus	46.72	42.13
KRH06897	Soybean	nucleus	47.6	41.52
Solyc02g094360.2.1	Tomato	nucleus	46.07	40.73
VIT_17s0000g00860.t01	Wine grape	nucleus	46.07	39.37
HORVU3Hr1G095600.3	Barley	extracellular	12.23	38.1
GSMUA_Achr11P...	Banana	nucleus	41.7	36.66
GSMUA_Achr10P...	Banana	nucleus	41.7	36.52
Bra006045.1-P	Field mustard	nucleus	31.22	30.75
Os01t0925000-02	Rice	nucleus	30.35	28.37
TraesCS3A01G437300.1	Wheat	nucleus	27.51	26.75
EES04124	Sorghum	nucleus	29.48	26.73
TraesCS3D01G429500.1	Wheat	nucleus	26.64	26.58
TraesCS3B01G471400.1	Wheat	endoplasmic reticulum	27.95	25.5
Zm00001d011975_P002	Maize	nucleus	28.17	25.29
Zm00001d042291_P002	Maize	mitochondrion, nucleus	20.09	20.77
HORVU3Hr1G095520.4	Barley	cytosol, nucleus	16.16	20.11

Protein Annotations

EnsemblPlants:Bra039100.1	EnsemblPlants:Bra039100.1-P	EnsemblPlantsGene:Bra039100	Gene3D:1.25.40.90	InterPro:CID_dom	InterPro:ENTH_VHS
InterPro:IPR006569	InterPro:IPR008942	InterPro:RNA_pol_II-bd	ncoils:Coil	PANTHER:PTHR12460	PFAM:PF04818
PFscan:PS51391	SEG:seg	SMART:SM00582	SUPFAM:SSF48464	UniParc:UPI0002541B23	UniProt:M4FDC9
MapMan:35.2	:	:	:	:	:

Description

AT3G26990 (E=3e-172) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), Regulation of nuclear pre-mRNA protein (InterPro:IPR006569), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10060.1); Has 815 Blast hits to 806 proteins in 138 species: Archae - 0; Bacteria - 10; Metazoa - 490; Fungi - 159; Plants - 81; Viruses - 1; Other Eukaryotes - 74 (source: NCBI BLink).

Coordinates

chrA09:+:1165199..1166988

Molecular Weight (calculated)

50170.1 Da

IEP (calculated)

6.843

GRAVY (calculated)

-0.465

Length

458 amino acids

Sequence
(BLAST)

001: MGSSFNAQVL AEKLAKLNSS QASIETLSHW CIFHMNKAKH VVETWGRQFH CSPREQRLAY LYLANDILQN SRRRGSEFVG EFWSVLPDAL RDVIENGDDS
101: ERKSALRLVN IWEERKVFGS SGQILKEEIL RKVSDGGVVP LNLKQANAIP LERVVSAVEA LHGGQINLDD VVGKCTNVVG YLEKAAQEVE RDVSSGHTPG
201: AAVVKEVQGQ HTILRDCIEQ LVAMETSRTS LISHLREALQ EQEHKLEQVR NHLQIARFQS DRTGDLCKQL SSSSQPPDEV IKVSFTASAP VMFASNPPTQ
301: PVVVADPRKT EAAAMVAKLT ASTSSAEMLS YVLSSFASEN NPPAATETHP PEKRPKLQQN TSTATTTSPP PPPPPAFQLQ PQFLQPLQPP GPVNHTPFSH
401: TIATTTQQQQ QGPWIPGLTS LSTTSAPSDN NSYQKFQGQD GFYGTSNSPS SMAPVTRQ

Best Arabidopsis Sequence Match ( AT3G26990.1 )
(BLAST)

001: MGSSFNAQIL VEKLAKLNNS QASIETLSHW CIFHMNKAKH VVETWGRQFH CAPREQRLAY LYLANDILQN SRRKGSEFVG EFWKVLPDAL RDMIENGDDF
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ

Arabidopsis Description

At3g26990 [Source:UniProtKB/TrEMBL;Acc:Q66GK1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.